3CWBI

Chicken cytochrome bc1 complex inhibited by an iodinated analogue of the polyketide crocacin-d
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
51
structure length
51
Chain Sequence
XXXXXXXXXXXXXXXXXXXXRPLLCRESMSGRSARRDLVAGISLNAPASVR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The role of molecular modeling in the design of analogues of the fungicidal natural products crocacins A and D.
pubmed doi rcsb
molecule keywords MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE
molecule tags Oxidoreductase
structure length 51
sequence length 51
chains with identical sequence V
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2008-04-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 3cwbI00
1PPJI 1NTZI 3L75I 1NU1I 3L72I 1L0LI 3H1LI 4U3FI 3CWBI 3H1KI 1PP9I 1NTMI 3H1JI 3L71I 1SQVI 1SQPI 1SQXI 1SQQI 2A06I 2FYUI 3TGUI 3H1II 3L73I 1L0NI 1SQBI 3L74I 1NTKI 3L70I 3H1HI
chains in the Genus database with same CATH superfamily
1PPJI 1NTZI 3L75I 1NU1I 3L72I 1L0LI 3H1LI 4U3FI 3CWBI 3H1KI 1PP9I 1NTMI 3H1JI 3L71I 1SQVI 1SQPI 1SQXI 1SQQI 2A06I 2FYUI 3TGUI 3H1II 3L73I 1L0NI 1SQBI 3L74I 1NTKI 3L70I 3H1HI
chains in the Genus database with same CATH topology
1PPJI 1NTZI 3L75I 1NU1I 3L72I 1L0LI 3H1LI 4U3FI 3CWBI 3H1KI 1PP9I 1NTMI 3H1JI 3L71I 1SQVI 1SQPI 1SQXI 1SQQI 2A06I 2FYUI 3TGUI 3H1II 3L73I 1L0NI 1SQBI 3L74I 1NTKI 3L70I 3H1HI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1PPJ I;  1NTZ I;  3L75 I;  1NU1 I;  3L72 I;  1L0L I;  3H1L I;  4U3F I;  3CWB I;  3H1K I;  1PP9 I;  1NTM I;  3H1J I;  3L71 I;  1SQV I;  1SQP I;  1SQX I;  1SQQ I;  2A06 I;  2FYU I;  3TGU I;  3H1I I;  3L73 I;  1L0N I;  1SQB I;  3L74 I;  1NTK I;  3L70 I;  3H1H I; 
#chains in the Genus database with same CATH topology
 1PPJ I;  1NTZ I;  3L75 I;  1NU1 I;  3L72 I;  1L0L I;  3H1L I;  4U3F I;  3CWB I;  3H1K I;  1PP9 I;  1NTM I;  3H1J I;  3L71 I;  1SQV I;  1SQP I;  1SQX I;  1SQQ I;  2A06 I;  2FYU I;  3TGU I;  3H1I I;  3L73 I;  1L0N I;  1SQB I;  3L74 I;  1NTK I;  3L70 I;  3H1H I; 
#chains in the Genus database with same CATH homology
 1PPJ I;  1NTZ I;  3L75 I;  1NU1 I;  3L72 I;  1L0L I;  3H1L I;  4U3F I;  3CWB I;  3H1K I;  1PP9 I;  1NTM I;  3H1J I;  3L71 I;  1SQV I;  1SQP I;  1SQX I;  1SQQ I;  2A06 I;  2FYU I;  3TGU I;  3H1I I;  3L73 I;  1L0N I;  1SQB I;  3L74 I;  1NTK I;  3L70 I;  3H1H I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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