The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
230
|
sequence length |
535
|
structure length |
535
|
Chain Sequence |
FTRWFMSTNHKDIGVLYLFTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGFFQSLWPSAVENCTPNGHLWNVMITGHGILMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRMNNLSYWLYVAGTSLAVASLFAPGGNGQLGSGIGWVLYPPLSTSESGYSTDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITMLLTDRNFGTTFFQPSGGGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVLGFVVWAHHMYTAGLSLTQQSYFMMATMVIAVPTGIMIFSWIATMWGGSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGIFAGIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPEAFATWNFVSSLGAFLSFASFLFFLGVIFYTLTRGARVTANNYWNEHADTLEWTLTSPPPEHTF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystallographic and online spectral evidence for role of conformational change and conserved water in cytochrome oxidase proton pump.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Rhodobacter sphaeroides 2.4.1
|
| molecule keywords |
Cytochrome c oxidase, aa3 type, subunit I
|
| total genus |
230
|
| structure length |
535
|
| sequence length |
535
|
| chains with identical sequence |
C
|
| ec nomenclature |
ec
1.9.3.1: Cytochrome-c oxidase. |
| pdb deposition date | 2010-08-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00115 | COX1 | Cytochrome C and Quinol oxidase polypeptide I |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Cytochrome C Oxidase; Chain A | Cytochrome c oxidase-like, subunit I domain |
#chains in the Genus database with same CATH superfamily 3WG7 A; 3AYG A; 3ABM A; 3EHB A; 3FYE A; 1OCZ A; 3ABL A; 1AR1 A; 5IY5 A; 2EIM A; 3AG1 A; 3QJQ A; 3O0R B; 2DYS A; 2QPE A; 4G7R A; 2EIN A; 4N4Y A; 4GP4 A; 3WFC B; 1XME A; 4FAA A; 1QLE A; 1FFT A; 1OCO A; 4GP5 A; 5B1B A; 3WFE B; 4G71 A; 3ASO A; 4G7S A; 3EH4 A; 1V55 A; 3ABK A; 3ASN A; 1EHK A; 2ZXW A; 3QJT A; 5DJQ A; 3OMN A; 3OMA A; 1M57 A; 2QPD A; 2EIJ A; 1M56 A; 3QJS A; 4G7Q A; 2YEV A; 3AG3 A; 3EH3 A; 2Y69 A; 3QJV A; 1OCR A; 4GP8 A; 3DTU A; 3QJR A; 3OM3 A; 2EIK A; 3S3C A; 3AG4 A; 3OMI A; 3S3B A; 3MK7 A; 3AYF A; 4FA7 A; 3WFD B; 4XYD A; 2DYR A; 3HB3 A; 4G70 A; 3S8G A; 5B1A A; 3S8F A; 3QJU A; 3BVD A; 3AG2 A; 1V54 A; 3X2Q A; 1OCC A; 5B3S A; 2EIL A; 3WFB B; 3FYI A; 3S3D A; 3EH5 A; 2GSM A; 4G72 A; 2OCC A; #chains in the Genus database with same CATH topology 3WG7 A; 3AYG A; 3ABM A; 3EHB A; 3FYE A; 1OCZ A; 3ABL A; 1AR1 A; 5IY5 A; 2EIM A; 3AG1 A; 3QJQ A; 3O0R B; 2DYS A; 2QPE A; 4G7R A; 2EIN A; 4N4Y A; 4GP4 A; 3WFC B; 1XME A; 4FAA A; 1QLE A; 1FFT A; 1OCO A; 4GP5 A; 5B1B A; 3WFE B; 4G71 A; 3ASO A; 4G7S A; 3EH4 A; 1V55 A; 3ABK A; 3ASN A; 1EHK A; 2ZXW A; 3QJT A; 5DJQ A; 3OMN A; 3OMA A; 1M57 A; 2QPD A; 2EIJ A; 1M56 A; 3QJS A; 4G7Q A; 2YEV A; 3AG3 A; 3EH3 A; 2Y69 A; 3QJV A; 1OCR A; 4GP8 A; 3DTU A; 3QJR A; 3OM3 A; 2EIK A; 3S3C A; 3AG4 A; 3OMI A; 3S3B A; 3MK7 A; 3AYF A; 4FA7 A; 3WFD B; 4XYD A; 2DYR A; 3HB3 A; 4G70 A; 3S8G A; 5B1A A; 3S8F A; 3QJU A; 3BVD A; 3AG2 A; 1V54 A; 3X2Q A; 1OCC A; 5B3S A; 2EIL A; 3WFB B; 3FYI A; 3S3D A; 3EH5 A; 2GSM A; 4G72 A; 2OCC A; #chains in the Genus database with same CATH homology 3WG7 A; 3AYG A; 3ABM A; 3EHB A; 3FYE A; 1OCZ A; 3ABL A; 1AR1 A; 5IY5 A; 2EIM A; 3AG1 A; 3QJQ A; 3O0R B; 2DYS A; 2QPE A; 4G7R A; 2EIN A; 4N4Y A; 4GP4 A; 3WFC B; 1XME A; 4FAA A; 1QLE A; 1FFT A; 1OCO A; 4GP5 A; 5B1B A; 3WFE B; 4G71 A; 3ASO A; 4G7S A; 3EH4 A; 1V55 A; 3ABK A; 3ASN A; 1EHK A; 2ZXW A; 3QJT A; 5DJQ A; 3OMN A; 3OMA A; 1M57 A; 2QPD A; 2EIJ A; 1M56 A; 3QJS A; 4G7Q A; 2YEV A; 3AG3 A; 3EH3 A; 2Y69 A; 3QJV A; 1OCR A; 4GP8 A; 3DTU A; 3QJR A; 3OM3 A; 2EIK A; 3S3C A; 3AG4 A; 3OMI A; 3S3B A; 3MK7 A; 3AYF A; 4FA7 A; 3WFD B; 4XYD A; 2DYR A; 3HB3 A; 4G70 A; 3S8G A; 5B1A A; 3S8F A; 3QJU A; 3BVD A; 3AG2 A; 1V54 A; 3X2Q A; 1OCC A; 5B3S A; 2EIL A; 3WFB B; 3FYI A; 3S3D A; 3EH5 A; 2GSM A; 4G72 A; 2OCC A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
