3VZ9B

Crystal structure of the chicken spc24-spc25 globular domain
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
103
structure length
103
Chain Sequence
TKERVERLCKSKELFEERLGLEIRRIHNEQLQFIFRHIDHKDPDKPYMFTLSINEQGDYEVTSCTPPLDCISEFQLKVRETNNFSAFIANIRKAFTALSFKQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title CENP-T provides a structural platform for outer kinetochore assembly
pubmed doi rcsb
molecule tags Cell cycle
source organism Gallus gallus
molecule keywords Uncharacterized protein
total genus 30
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 2012-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF08234 Spindle_Spc25 Chromosome segregation protein Spc25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.457.50 Alpha Beta 2-Layer Sandwich Copper Amine Oxidase; Chain A, domain 1 Copper Amine Oxidase; Chain A, domain 1 3vz9B00
2FTXA 5T6JB 3VZ9B 4GEQA 2FV4A 3VZAA 5TCSD
chains in the Genus database with same CATH superfamily
1QALA 1OACA 1QAFA 1D6YA 2WOHA 3VZAA 1DYUA 2FTXA 2W0QA 2WOFA 2FV4A 1D6ZA 1SPUA 2WO0A 5TCSD 5T6JB 4GEQA 1QAKA 1LVNA 2WGQA 4DZOA 1JRQA 3VZ9B 3K1LA 1D6UA
chains in the Genus database with same CATH topology
2FTXA 5T6JB 4DZOA 3VZ9B 3K1LA 4GEQA 2FV4A 3VZAA 5TCSD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FTX A;  5T6J B;  3VZ9 B;  4GEQ A;  2FV4 A;  3VZA A;  5TCS D; 
#chains in the Genus database with same CATH topology
 1QAL A;  1OAC A;  1QAF A;  1D6Y A;  2WOH A;  3VZA A;  1DYU A;  2FTX A;  2W0Q A;  2WOF A;  2FV4 A;  1D6Z A;  1SPU A;  2WO0 A;  5TCS D;  5T6J B;  4GEQ A;  1QAK A;  1LVN A;  2WGQ A;  4DZO A;  1JRQ A;  3VZ9 B;  3K1L A;  1D6U A; 
#chains in the Genus database with same CATH homology
 2FTX A;  5T6J B;  4DZO A;  3VZ9 B;  3K1L A;  4GEQ A;  2FV4 A;  3VZA A;  5TCS D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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