4GEQA

Crystal structure of the spc24-spc25/cnn1 binding interface
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
89
structure length
89
Chain Sequence
NDAAEVALYERLLQLRVLPGASDVHDVRFVFGDDSRCWIEVAMHGDHVIGNSHPALDPKSRATLEHVLTVQGDLAAFLVVARDMLLASL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A structural basis for kinetochore recruitment of the Ndc80 complex via two distinct centromere receptors.
pubmed doi rcsb
molecule tags Cell cycle
source organism Saccharomyces cerevisiae s288c
molecule keywords Kinetochore protein SPC25
total genus 22
structure length 89
sequence length 89
chains with identical sequence C
ec nomenclature
pdb deposition date 2012-08-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.457.50 Alpha Beta 2-Layer Sandwich Copper Amine Oxidase; Chain A, domain 1 Copper Amine Oxidase; Chain A, domain 1 4geqA00
2FV4A 2FTXA 5TCSD 3VZ9B 5T6JB 4GEQA 3VZAA
chains in the Genus database with same CATH superfamily
2WGQA 1QAKA 3VZ9B 3K1LA 4DZOA 1SPUA 1QALA 1LVNA 2WO0A 2WOFA 1OACA 1D6UA 1JRQA 2WOHA 2FV4A 4GEQA 1QAFA 1D6ZA 2FTXA 5TCSD 5T6JB 2W0QA 1D6YA 1DYUA 3VZAA
chains in the Genus database with same CATH topology
2FV4A 2FTXA 5TCSD 3VZ9B 5T6JB 3K1LA 4DZOA 4GEQA 3VZAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FV4 A;  2FTX A;  5TCS D;  3VZ9 B;  5T6J B;  4GEQ A;  3VZA A; 
#chains in the Genus database with same CATH topology
 2WGQ A;  1QAK A;  3VZ9 B;  3K1L A;  4DZO A;  1SPU A;  1QAL A;  1LVN A;  2WO0 A;  2WOF A;  1OAC A;  1D6U A;  1JRQ A;  2WOH A;  2FV4 A;  4GEQ A;  1QAF A;  1D6Z A;  2FTX A;  5TCS D;  5T6J B;  2W0Q A;  1D6Y A;  1DYU A;  3VZA A; 
#chains in the Genus database with same CATH homology
 2FV4 A;  2FTX A;  5TCS D;  3VZ9 B;  5T6J B;  3K1L A;  4DZO A;  4GEQ A;  3VZA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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