The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
53
|
sequence length |
210
|
structure length |
210
|
Chain Sequence |
MTTLTRQDLNFGQVVADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLLSHVEQLLAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis of Rev1-mediated assembly of a quaternary vertebrate translesion polymerase complex consisting of Rev1, heterodimeric Pol zeta and Pol kappa
pubmed doi rcsb |
| molecule tags |
Transferase/dna binding protein
|
| source organism |
Mus musculus
|
| molecule keywords |
DNA repair protein REV1
|
| total genus |
53
|
| structure length |
210
|
| sequence length |
210
|
| ec nomenclature | |
| pdb deposition date | 2012-06-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF02301 | HORMA | HORMA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A | HORMA domain |
#chains in the Genus database with same CATH superfamily 4TZQ A; 1GO4 A; 2V64 A; 4TZJ A; 4AEZ B; 3GMH A; 3ABD A; 1DUJ A; 4TZN A; 4EXT C; 4GK0 A; 4TZM A; 4J2G A; 5LCW Z; 2QYF A; 2V64 D; 4YK8 B; 4FJO C; 1KLQ A; 4TZL A; 3VU7 C; 4TRK A; 1S2H A; 4TZO A; 2VFX A; 4GK5 A; 4TZS A; 5C50 B; 3ABE C; #chains in the Genus database with same CATH topology 2QYF B; 4TZQ A; 1GO4 A; 2V64 A; 4TZJ A; 4AEZ B; 3GMH A; 3ABD A; 1DUJ A; 4TZN A; 4EXT C; 4GK0 A; 4TZM A; 4J2G A; 5LCW Z; 2QYF A; 2V64 D; 4YK8 B; 4FJO C; 1KLQ A; 4TZL A; 3VU7 C; 4TRK A; 1S2H A; 4TZO A; 2VFX A; 4GK5 A; 4TZS A; 5C50 B; 3ABE C; #chains in the Genus database with same CATH homology 4TZQ A; 1GO4 A; 2V64 A; 4TZJ A; 4AEZ B; 3GMH A; 3ABD A; 1DUJ A; 4TZN A; 4EXT C; 4GK0 A; 4TZM A; 4J2G A; 5LCW Z; 2QYF A; 2V64 D; 4YK8 B; 4FJO C; 1KLQ A; 4TZL A; 3VU7 C; 4TRK A; 1S2H A; 4TZO A; 2VFX A; 4GK5 A; 4TZS A; 5C50 B; 3ABE C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
