5AUO | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	136
structure length	136
Chain Sequence	MHEWALADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGVYVAGIKIEKE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 136 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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136 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Metal binding protein/hydrolase
source organism	Thermococcus kodakaraensis (strain atcc baa-918 / jcm 12380 / kod1)
publication title	Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer pubmed doi rcsb
molecule keywords	Probable hydrogenase nickel incorporation protein HypA
total genus	42
structure length	136
sequence length	136
ec nomenclature
pdb deposition date	2015-05-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01155	HypA	Hydrogenase/urease nickel incorporation, metallochaperone, hypA

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2320.50	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 fold	5auoA01

5AUOA 5AUNA 3A44A 5AUPA 3A43A
chains in the Genus database with same CATH superfamily

5AUNA 1QU3A 2DM9A 2KDXA 2LC0A 1WZ2A 2PK8A 2DMAA 1OHGA 3E8KA 3A44A 2E0ZA 4DT0A 3K5BA 5AUOA 4EFAE 2FT1A 4DL0E 3DKTA 2FSYA 1YUEA 3V6IA 5AUPA 3A43A
chains in the Genus database with same CATH topology

5AUOA 1YUEA 2DMAA 5AUNA 3V6IA 4EFAE 2DM9A 2KDXA 4DL0E 2LC0A 3A44A 5AUPA 4DT0A 3A43A 3K5BA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5AUO A;  5AUN A;  3A44 A;  5AUP A;  3A43 A; 
#chains in the Genus database with same CATH topology
 5AUN A;  1QU3 A;  2DM9 A;  2KDX A;  2LC0 A;  1WZ2 A;  2PK8 A;  2DMA A;  1OHG A;  3E8K A;  3A44 A;  2E0Z A;  4DT0 A;  3K5B A;  5AUO A;  4EFA E;  2FT1 A;  4DL0 E;  3DKT A;  2FSY A;  1YUE A;  3V6I A;  5AUP A;  3A43 A; 
#chains in the Genus database with same CATH homology
 5AUO A;  1YUE A;  2DMA A;  5AUN A;  3V6I A;  4EFA E;  2DM9 A;  2KDX A;  4DL0 E;  2LC0 A;  3A44 A;  5AUP A;  4DT0 A;  3A43 A;  3K5B A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5AUOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations