5AUP | Genus

Total Genus 34

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	136
structure length	136
Chain Sequence	MHEWALADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGVYVAGIKIEKE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer pubmed doi rcsb
molecule keywords	Probable hydrogenase nickel incorporation protein HypA
molecule tags	Metal binding protein/hydrolase
source organism	Thermococcus kodakaraensis (strain atcc baa-918 / jcm 12380 / kod1)
total genus	34
structure length	136
sequence length	136
chains with identical sequence	H
ec nomenclature
pdb deposition date	2015-05-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01155	HypA	Hydrogenase/urease nickel incorporation, metallochaperone, hypA

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2320.50	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 fold	5aupA01

5AUNA 3A43A 5AUPA 5AUOA 3A44A
chains in the Genus database with same CATH superfamily

4DL0E 3DKTA 3A44A 2FSYA 3V6IA 1YUEA 3K5BA 3E8KA 2PK8A 5AUNA 3A43A 2KDXA 5AUPA 4EFAE 1WZ2A 1QU3A 4DT0A 1OHGA 2FT1A 2DM9A 5AUOA 2LC0A 2E0ZA 2DMAA
chains in the Genus database with same CATH topology

4DT0A 5AUNA 2LC0A 3V6IA 3A43A 2KDXA 1YUEA 2DM9A 3K5BA 5AUPA 4DL0E 4EFAE 5AUOA 3A44A 2DMAA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5AUN A;  3A43 A;  5AUP A;  5AUO A;  3A44 A; 
#chains in the Genus database with same CATH topology
 4DL0 E;  3DKT A;  3A44 A;  2FSY A;  3V6I A;  1YUE A;  3K5B A;  3E8K A;  2PK8 A;  5AUN A;  3A43 A;  2KDX A;  5AUP A;  4EFA E;  1WZ2 A;  1QU3 A;  4DT0 A;  1OHG A;  2FT1 A;  2DM9 A;  5AUO A;  2LC0 A;  2E0Z A;  2DMA A; 
#chains in the Genus database with same CATH homology
 4DT0 A;  5AUN A;  2LC0 A;  3V6I A;  3A43 A;  2KDX A;  1YUE A;  2DM9 A;  3K5B A;  5AUP A;  4DL0 E;  4EFA E;  5AUO A;  3A44 A;  2DMA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5AUPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations