1GQBA

Human mir-receptor, repeat 11
Total Genus 32
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
135
structure length
131
Chain Sequence
HDDCQVTNPSTGHLFDLSSLSGRAGFTAAYSEKGLVYMSICGENENCPPGVGACFGQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVISFVCRPENRPMLISLDKQTCTLFFSWHTPLACE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Locating the Anomalous Scatterer Substructures in Halide and Sulfur Phasing
pubmed doi rcsb
molecule tags Receptor
source organism Homo sapiens
molecule keywords CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR
total genus 32
structure length 131
sequence length 135
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-11-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 1gqbA00
2KVBA 1GQBA 3K41A 1Q25A 1E6FA 3AIHA 1GP0A 2RLBA 2LVXA 2CNJD 2L2GA 1C39A 2N1HA 1SYOA 2M6TA 1GP3A 3K43A 4XQMA 2L2AA 2LLAA 3K42A 2KVAA 1M6PA 2V5OA 1KEOA 2L29A 2RL9A 2V5NA 2M68A 2L21A 5IEIA 2RL8A 1SZ0A 3CY4A 2RL7A
chains in the Genus database with same CATH superfamily
2KVBA 1GQBA 3K41A 1Q25A 1E6FA 3AIHA 1GP0A 2RLBA 2LVXA 2CNJD 2L2GA 1C39A 2N1HA 1SYOA 2M6TA 1GP3A 3K43A 4XQMA 2L2AA 2LLAA 3K42A 2KVAA 1M6PA 2V5OA 1KEOA 2L29A 2RL9A 2V5NA 2M68A 2L21A 5IEIA 2RL8A 1SZ0A 3CY4A 2RL7A
chains in the Genus database with same CATH topology
2KVBA 1GQBA 3K41A 1Q25A 1E6FA 3AIHA 1GP0A 2RLBA 2LVXA 2CNJD 2L2GA 1C39A 2N1HA 1SYOA 2M6TA 1GP3A 3K43A 4XQMA 2L2AA 2LLAA 3K42A 2KVAA 1M6PA 2V5OA 1KEOA 2L29A 2RL9A 2V5NA 2M68A 2L21A 5IEIA 2RL8A 1SZ0A 3CY4A 2RL7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KVB A;  1GQB A;  3K41 A;  1Q25 A;  1E6F A;  3AIH A;  1GP0 A;  2RLB A;  2LVX A;  2CNJ D;  2L2G A;  1C39 A;  2N1H A;  1SYO A;  2M6T A;  1GP3 A;  3K43 A;  4XQM A;  2L2A A;  2LLA A;  3K42 A;  2KVA A;  1M6P A;  2V5O A;  1KEO A;  2L29 A;  2RL9 A;  2V5N A;  2M68 A;  2L21 A;  5IEI A;  2RL8 A;  1SZ0 A;  3CY4 A;  2RL7 A; 
#chains in the Genus database with same CATH topology
 2KVB A;  1GQB A;  3K41 A;  1Q25 A;  1E6F A;  3AIH A;  1GP0 A;  2RLB A;  2LVX A;  2CNJ D;  2L2G A;  1C39 A;  2N1H A;  1SYO A;  2M6T A;  1GP3 A;  3K43 A;  4XQM A;  2L2A A;  2LLA A;  3K42 A;  2KVA A;  1M6P A;  2V5O A;  1KEO A;  2L29 A;  2RL9 A;  2V5N A;  2M68 A;  2L21 A;  5IEI A;  2RL8 A;  1SZ0 A;  3CY4 A;  2RL7 A; 
#chains in the Genus database with same CATH homology
 2KVB A;  1GQB A;  3K41 A;  1Q25 A;  1E6F A;  3AIH A;  1GP0 A;  2RLB A;  2LVX A;  2CNJ D;  2L2G A;  1C39 A;  2N1H A;  1SYO A;  2M6T A;  1GP3 A;  3K43 A;  4XQM A;  2L2A A;  2LLA A;  3K42 A;  2KVA A;  1M6P A;  2V5O A;  1KEO A;  2L29 A;  2RL9 A;  2V5N A;  2M68 A;  2L21 A;  5IEI A;  2RL8 A;  1SZ0 A;  3CY4 A;  2RL7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...