1KEOA

Twists and turns of the cd-mpr: ligand-bound versus ligand-free receptor
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
152
structure length
152
Chain Sequence
EKTCDLVGEKGKESEKELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Twists and turns of the cation-dependent mannose 6-phosphate receptor. Ligand-bound versus ligand-free receptor
pubmed doi rcsb
molecule tags Sugar binding protein
source organism Bos taurus
molecule keywords cation-dependent mannose-6-phosphate receptor
total genus 38
structure length 152
sequence length 152
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-11-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 1keoA00
2M6TA 4XQMA 2V5OA 2L2AA 2RL9A 2CNJD 3CY4A 1E6FA 1M6PA 2KVAA 2KVBA 1C39A 2RL8A 2RLBA 1GP3A 2LVXA 2L21A 2N1HA 1KEOA 2RL7A 1Q25A 2V5NA 3K41A 2L29A 2L2GA 3K42A 1SZ0A 3AIHA 5IEIA 3K43A 1SYOA 2LLAA 2M68A 1GQBA 1GP0A
chains in the Genus database with same CATH superfamily
2M6TA 4XQMA 2V5OA 2L2AA 2RL9A 2CNJD 3CY4A 1E6FA 1M6PA 2KVAA 2KVBA 1C39A 2RL8A 2RLBA 1GP3A 2LVXA 2L21A 2N1HA 1KEOA 2RL7A 1Q25A 2V5NA 3K41A 2L29A 2L2GA 3K42A 1SZ0A 3AIHA 5IEIA 3K43A 1SYOA 2LLAA 2M68A 1GQBA 1GP0A
chains in the Genus database with same CATH topology
2M6TA 4XQMA 2V5OA 2L2AA 2RL9A 2CNJD 3CY4A 1E6FA 1M6PA 2KVAA 2KVBA 1C39A 2RL8A 2RLBA 1GP3A 2LVXA 2L21A 2N1HA 1KEOA 2RL7A 1Q25A 2V5NA 3K41A 2L29A 2L2GA 3K42A 1SZ0A 3AIHA 5IEIA 3K43A 1SYOA 2LLAA 2M68A 1GQBA 1GP0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M6T A;  4XQM A;  2V5O A;  2L2A A;  2RL9 A;  2CNJ D;  3CY4 A;  1E6F A;  1M6P A;  2KVA A;  2KVB A;  1C39 A;  2RL8 A;  2RLB A;  1GP3 A;  2LVX A;  2L21 A;  2N1H A;  1KEO A;  2RL7 A;  1Q25 A;  2V5N A;  3K41 A;  2L29 A;  2L2G A;  3K42 A;  1SZ0 A;  3AIH A;  5IEI A;  3K43 A;  1SYO A;  2LLA A;  2M68 A;  1GQB A;  1GP0 A; 
#chains in the Genus database with same CATH topology
 2M6T A;  4XQM A;  2V5O A;  2L2A A;  2RL9 A;  2CNJ D;  3CY4 A;  1E6F A;  1M6P A;  2KVA A;  2KVB A;  1C39 A;  2RL8 A;  2RLB A;  1GP3 A;  2LVX A;  2L21 A;  2N1H A;  1KEO A;  2RL7 A;  1Q25 A;  2V5N A;  3K41 A;  2L29 A;  2L2G A;  3K42 A;  1SZ0 A;  3AIH A;  5IEI A;  3K43 A;  1SYO A;  2LLA A;  2M68 A;  1GQB A;  1GP0 A; 
#chains in the Genus database with same CATH homology
 2M6T A;  4XQM A;  2V5O A;  2L2A A;  2RL9 A;  2CNJ D;  3CY4 A;  1E6F A;  1M6P A;  2KVA A;  2KVB A;  1C39 A;  2RL8 A;  2RLB A;  1GP3 A;  2LVX A;  2L21 A;  2N1H A;  1KEO A;  2RL7 A;  1Q25 A;  2V5N A;  3K41 A;  2L29 A;  2L2G A;  3K42 A;  1SZ0 A;  3AIH A;  5IEI A;  3K43 A;  1SYO A;  2LLA A;  2M68 A;  1GQB A;  1GP0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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