1MPZA

Nmr solution structure of native viperidae lebetina obtusa protein
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
41
structure length
41
Chain Sequence
CTTGPCCRQCKLKPAGTTCWKTSLTSHYCTGKSCDCPLYPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title NMR Solution Structure of the Non-RGD Disintegrin Obtustatin
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Obtustatin
total genus 3
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2002-09-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.70.10 Few Secondary Structures Irregular Echistatin Disintegrin domain 1mpzA00
2MP51 4R5UA 1RMRA 1TEJB 3G5CA 3UCIA 1N4YA 2W9UA 2W9WA 2PJFA 2MOP1 3C05B 1TEJA 1MPZA 2M7HA 4RQGA 2W9OA 2PJIA 3C05A 2PJGA 2LJVA 1FVLA 1L3XA 1RO3A 4R5RA 2ECHA 1Q7JA 2M75A 1Q7IA 1Z1XA 4M4CA 1J2LA 2M7FA 2W9VA
chains in the Genus database with same CATH superfamily
2MP51 4R5UA 1RMRA 1TEJB 3G5CA 3UCIA 1N4YA 2W9UA 2W9WA 2PJFA 2MOP1 3C05B 1TEJA 1MPZA 2M7HA 4RQGA 2W9OA 2PJIA 3C05A 2PJGA 2LJVA 1FVLA 1L3XA 1RO3A 4R5RA 2ECHA 1Q7JA 2M75A 1Q7IA 1Z1XA 4M4CA 1J2LA 2M7FA 2W9VA
chains in the Genus database with same CATH topology
2MP51 4R5UA 1RMRA 1TEJB 3G5CA 3UCIA 1N4YA 2W9UA 2W9WA 2PJFA 2MOP1 3C05B 1TEJA 1MPZA 2M7HA 4RQGA 2W9OA 2PJIA 3C05A 2PJGA 2LJVA 1FVLA 1L3XA 1RO3A 4R5RA 2ECHA 1Q7JA 2M75A 1Q7IA 1Z1XA 4M4CA 1J2LA 2M7FA 2W9VA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2MP5 1;  4R5U A;  1RMR A;  1TEJ B;  3G5C A;  3UCI A;  1N4Y A;  2W9U A;  2W9W A;  2PJF A;  2MOP 1;  3C05 B;  1TEJ A;  1MPZ A;  2M7H A;  4RQG A;  2W9O A;  2PJI A;  3C05 A;  2PJG A;  2LJV A;  1FVL A;  1L3X A;  1RO3 A;  4R5R A;  2ECH A;  1Q7J A;  2M75 A;  1Q7I A;  1Z1X A;  4M4C A;  1J2L A;  2M7F A;  2W9V A; 
#chains in the Genus database with same CATH topology
 2MP5 1;  4R5U A;  1RMR A;  1TEJ B;  3G5C A;  3UCI A;  1N4Y A;  2W9U A;  2W9W A;  2PJF A;  2MOP 1;  3C05 B;  1TEJ A;  1MPZ A;  2M7H A;  4RQG A;  2W9O A;  2PJI A;  3C05 A;  2PJG A;  2LJV A;  1FVL A;  1L3X A;  1RO3 A;  4R5R A;  2ECH A;  1Q7J A;  2M75 A;  1Q7I A;  1Z1X A;  4M4C A;  1J2L A;  2M7F A;  2W9V A; 
#chains in the Genus database with same CATH homology
 2MP5 1;  4R5U A;  1RMR A;  1TEJ B;  3G5C A;  3UCI A;  1N4Y A;  2W9U A;  2W9W A;  2PJF A;  2MOP 1;  3C05 B;  1TEJ A;  1MPZ A;  2M7H A;  4RQG A;  2W9O A;  2PJI A;  3C05 A;  2PJG A;  2LJV A;  1FVL A;  1L3X A;  1RO3 A;  4R5R A;  2ECH A;  1Q7J A;  2M75 A;  1Q7I A;  1Z1X A;  4M4C A;  1J2L A;  2M7F A;  2W9V A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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