1MPZA

Nmr solution structure of native viperidae lebetina obtusa protein
Total Genus 3
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
41
structure length
41
Chain Sequence
CTTGPCCRQCKLKPAGTTCWKTSLTSHYCTGKSCDCPLYPG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title NMR Solution Structure of the Non-RGD Disintegrin Obtustatin
pubmed doi rcsb
molecule keywords Obtustatin
molecule tags Hydrolase
total genus 3
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2002-09-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.70.10 Few Secondary Structures Irregular Echistatin Disintegrin domain 1mpzA00
1RO3A 2W9OA 4R5UA 2LJVA 4RQGA 1Z1XA 2W9WA 4R5RA 3G5CA 1L3XA 3C05A 1N4YA 1MPZA 1Q7JA 2M75A 1Q7IA 1TEJA 2PJGA 3C05B 3UCIA 1FVLA 4M4CA 1RMRA 1J2LA 2PJFA 2W9VA 2PJIA 2ECHA 2M7FA 1TEJB 2W9UA 2M7HA 2MOP1 2MP51
chains in the Genus database with same CATH superfamily
1RO3A 2W9OA 4R5UA 2LJVA 4RQGA 1Z1XA 2W9WA 4R5RA 3G5CA 1L3XA 3C05A 1N4YA 1MPZA 1Q7JA 2M75A 1Q7IA 1TEJA 2PJGA 3C05B 3UCIA 1FVLA 4M4CA 1RMRA 1J2LA 2PJFA 2W9VA 2PJIA 2ECHA 2M7FA 1TEJB 2W9UA 2M7HA 2MOP1 2MP51
chains in the Genus database with same CATH topology
1RO3A 2W9OA 4R5UA 2LJVA 4RQGA 1Z1XA 2W9WA 4R5RA 3G5CA 1L3XA 3C05A 1N4YA 1MPZA 1Q7JA 2M75A 1Q7IA 1TEJA 2PJGA 3C05B 3UCIA 1FVLA 4M4CA 1RMRA 1J2LA 2PJFA 2W9VA 2PJIA 2ECHA 2M7FA 1TEJB 2W9UA 2M7HA 2MOP1 2MP51
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1RO3 A;  2W9O A;  4R5U A;  2LJV A;  4RQG A;  1Z1X A;  2W9W A;  4R5R A;  3G5C A;  1L3X A;  3C05 A;  1N4Y A;  1MPZ A;  1Q7J A;  2M75 A;  1Q7I A;  1TEJ A;  2PJG A;  3C05 B;  3UCI A;  1FVL A;  4M4C A;  1RMR A;  1J2L A;  2PJF A;  2W9V A;  2PJI A;  2ECH A;  2M7F A;  1TEJ B;  2W9U A;  2M7H A;  2MOP 1;  2MP5 1; 
#chains in the Genus database with same CATH topology
 1RO3 A;  2W9O A;  4R5U A;  2LJV A;  4RQG A;  1Z1X A;  2W9W A;  4R5R A;  3G5C A;  1L3X A;  3C05 A;  1N4Y A;  1MPZ A;  1Q7J A;  2M75 A;  1Q7I A;  1TEJ A;  2PJG A;  3C05 B;  3UCI A;  1FVL A;  4M4C A;  1RMR A;  1J2L A;  2PJF A;  2W9V A;  2PJI A;  2ECH A;  2M7F A;  1TEJ B;  2W9U A;  2M7H A;  2MOP 1;  2MP5 1; 
#chains in the Genus database with same CATH homology
 1RO3 A;  2W9O A;  4R5U A;  2LJV A;  4RQG A;  1Z1X A;  2W9W A;  4R5R A;  3G5C A;  1L3X A;  3C05 A;  1N4Y A;  1MPZ A;  1Q7J A;  2M75 A;  1Q7I A;  1TEJ A;  2PJG A;  3C05 B;  3UCI A;  1FVL A;  4M4C A;  1RMR A;  1J2L A;  2PJF A;  2W9V A;  2PJI A;  2ECH A;  2M7F A;  1TEJ B;  2W9U A;  2M7H A;  2MOP 1;  2MP5 1;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite