4RQGA

Crystal structure of rhodostomin
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
66
structure length
66
Chain Sequence
ECDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIPRGDMPDDRCTGQSADCPRYH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Disintegrin rhodostomin
publication title Effects of the regions adjacent to the RGD motif in disintegrins on their inhibitory activities and structures
rcsb
source organism Calloselasma rhodostoma
total genus 15
structure length 66
sequence length 66
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-11-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.70.10 Few Secondary Structures Irregular Echistatin Disintegrin domain 4rqgA00
1RMRA 2LJVA 4M4CA 1RO3A 4RQGA 4R5UA 1TEJA 1MPZA 1TEJB 2W9OA 4R5RA 2PJIA 1L3XA 2M7FA 2W9WA 1FVLA 2MP51 1N4YA 2ECHA 2W9VA 2PJGA 2MOP1 3G5CA 1Q7IA 2W9UA 2M75A 2M7HA 1Q7JA 1Z1XA 3UCIA 1J2LA 2PJFA 3C05A 3C05B
chains in the Genus database with same CATH superfamily
1RMRA 2LJVA 4M4CA 1RO3A 4RQGA 4R5UA 1TEJA 1MPZA 1TEJB 2W9OA 4R5RA 2PJIA 1L3XA 2M7FA 2W9WA 1FVLA 2MP51 1N4YA 2ECHA 2W9VA 2PJGA 2MOP1 3G5CA 1Q7IA 2W9UA 2M75A 2M7HA 1Q7JA 1Z1XA 3UCIA 1J2LA 2PJFA 3C05A 3C05B
chains in the Genus database with same CATH topology
1RMRA 2LJVA 4M4CA 1RO3A 4RQGA 4R5UA 1TEJA 1MPZA 1TEJB 2W9OA 4R5RA 2PJIA 1L3XA 2M7FA 2W9WA 1FVLA 2MP51 1N4YA 2ECHA 2W9VA 2PJGA 2MOP1 3G5CA 1Q7IA 2W9UA 2M75A 2M7HA 1Q7JA 1Z1XA 3UCIA 1J2LA 2PJFA 3C05A 3C05B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RMR A;  2LJV A;  4M4C A;  1RO3 A;  4RQG A;  4R5U A;  1TEJ A;  1MPZ A;  1TEJ B;  2W9O A;  4R5R A;  2PJI A;  1L3X A;  2M7F A;  2W9W A;  1FVL A;  2MP5 1;  1N4Y A;  2ECH A;  2W9V A;  2PJG A;  2MOP 1;  3G5C A;  1Q7I A;  2W9U A;  2M75 A;  2M7H A;  1Q7J A;  1Z1X A;  3UCI A;  1J2L A;  2PJF A;  3C05 A;  3C05 B; 
#chains in the Genus database with same CATH topology
 1RMR A;  2LJV A;  4M4C A;  1RO3 A;  4RQG A;  4R5U A;  1TEJ A;  1MPZ A;  1TEJ B;  2W9O A;  4R5R A;  2PJI A;  1L3X A;  2M7F A;  2W9W A;  1FVL A;  2MP5 1;  1N4Y A;  2ECH A;  2W9V A;  2PJG A;  2MOP 1;  3G5C A;  1Q7I A;  2W9U A;  2M75 A;  2M7H A;  1Q7J A;  1Z1X A;  3UCI A;  1J2L A;  2PJF A;  3C05 A;  3C05 B; 
#chains in the Genus database with same CATH homology
 1RMR A;  2LJV A;  4M4C A;  1RO3 A;  4RQG A;  4R5U A;  1TEJ A;  1MPZ A;  1TEJ B;  2W9O A;  4R5R A;  2PJI A;  1L3X A;  2M7F A;  2W9W A;  1FVL A;  2MP5 1;  1N4Y A;  2ECH A;  2W9V A;  2PJG A;  2MOP 1;  3G5C A;  1Q7I A;  2W9U A;  2M75 A;  2M7H A;  1Q7J A;  1Z1X A;  3UCI A;  1J2L A;  2PJF A;  3C05 A;  3C05 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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