1KSQ | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	75
structure length	75
Chain Sequence	SADQPKEEKKECYYNLNDASLCDNVLAPNVTKQECCCTSGAGWGDNCEIFPCPVLGTAEFTEMCPKGKGFVPAGE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Homo sapiens
publication title	Solution Structure of the Third TB Domain from LTBP1 Provides Insight into Assembly of the Large Latent Complex that Sequesters Latent TGF-beta. pubmed doi rcsb
molecule keywords	LATENT TRANSFORMING GROWTH FACTOR BETA BINDING PROTEIN 1
total genus	9
structure length	75
sequence length	75
ec nomenclature
pdb deposition date	2002-01-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00683	TB	TB domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.290.10	Alpha Beta	Alpha-Beta Complex	Extracellular Matrix Fibrillin	TGF-beta binding (TB) domain	1ksqA00

1UZQA 3B4VC 1KSQA 2P6AC 1APJA 2B0UC 3SEKC 1UZKA 5JHWC 1UZJA 2W86A 3HH2C 1UZPA
chains in the Genus database with same CATH superfamily

1UZQA 3B4VC 1KSQA 2P6AC 1APJA 2B0UC 3SEKC 1UZKA 5JHWC 1UZJA 2W86A 3HH2C 1UZPA
chains in the Genus database with same CATH topology

1UZQA 3B4VC 1KSQA 2P6AC 1APJA 2B0UC 3SEKC 1UZKA 5JHWC 1UZJA 2W86A 3HH2C 1UZPA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1UZQ A;  3B4V C;  1KSQ A;  2P6A C;  1APJ A;  2B0U C;  3SEK C;  1UZK A;  5JHW C;  1UZJ A;  2W86 A;  3HH2 C;  1UZP A; 
#chains in the Genus database with same CATH topology
 1UZQ A;  3B4V C;  1KSQ A;  2P6A C;  1APJ A;  2B0U C;  3SEK C;  1UZK A;  5JHW C;  1UZJ A;  2W86 A;  3HH2 C;  1UZP A; 
#chains in the Genus database with same CATH homology
 1UZQ A;  3B4V C;  1KSQ A;  2P6A C;  1APJ A;  2B0U C;  3SEK C;  1UZK A;  5JHW C;  1UZJ A;  2W86 A;  3HH2 C;  1UZP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1KSQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations