2A0S | Genus

Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	45
sequence length	163
structure length	163
Chain Sequence	DQIAELLVESPLFSFNCAHFIAFKGFRETLHGHNYNVSLRLRGNIQGDGYVIDFSILKEKVRKVCKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVHRNI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 163 atoms

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163 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of 6-pyruvoyl tetrahydropterin synthase (PTPS) from Plasmodium vivax at 2.2 A resolution rcsb
molecule keywords	6-pyruvoyl tetrahydropterin synthase
molecule tags	Lyase, biosynthetic protein
source organism	Plasmodium vivax
total genus	45
structure length	163
sequence length	163
chains with identical sequence	B
ec nomenclature	ec 4.2.3.12: 6-pyruvoyltetrahydropterin synthase.
pdb deposition date	2005-06-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01242	PTPS	6-pyruvoyl tetrahydropterin synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.479.10	Alpha Beta	2-Layer Sandwich	Tetrahydropterin Synthase; Chain A	Tetrahydropterin Synthase; Chain A	2a0sA00

2G64A 3QNAA 1B6ZA 2OBAA 1Y13A 2DTTA 3JYGA 3QN9A 3QN0A 3I2BA 3M0NA 1B66A 1GTQA 4NTMA 2A0SA 3LX3A 3LZEA 3D7JA 4NTNA 4NTKA 2DJ6A
chains in the Genus database with same CATH superfamily

2G64A 3QNAA 1B6ZA 2OBAA 1Y13A 2DTTA 3JYGA 3QN9A 3QN0A 4Q7JA 3I2BA 3M0NA 1B66A 1GTQA 1XB2B 1WINA 4NTMA 2RPBA 1TFEA 2A0SA 4FVJA 3LX3A 3LZEA 4FVFA 1AIPC 1EFUB 3BK6A 3D7JA 4NTNA 4NTKA 2DJ6A 4FVGA
chains in the Genus database with same CATH topology

2G64A 3QNAA 1B6ZA 2OBAA 1Y13A 2DTTA 3JYGA 3QN9A 3QN0A 3I2BA 3M0NA 1B66A 1GTQA 1WINA 4NTMA 2RPBA 2A0SA 4FVJA 3LX3A 3LZEA 4FVFA 3BK6A 3D7JA 4NTNA 4NTKA 2DJ6A 4FVGA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2G64 A;  3QNA A;  1B6Z A;  2OBA A;  1Y13 A;  2DTT A;  3JYG A;  3QN9 A;  3QN0 A;  3I2B A;  3M0N A;  1B66 A;  1GTQ A;  4NTM A;  2A0S A;  3LX3 A;  3LZE A;  3D7J A;  4NTN A;  4NTK A;  2DJ6 A; 
#chains in the Genus database with same CATH topology
 2G64 A;  3QNA A;  1B6Z A;  2OBA A;  1Y13 A;  2DTT A;  3JYG A;  3QN9 A;  3QN0 A;  4Q7J A;  3I2B A;  3M0N A;  1B66 A;  1GTQ A;  1XB2 B;  1WIN A;  4NTM A;  2RPB A;  1TFE A;  2A0S A;  4FVJ A;  3LX3 A;  3LZE A;  4FVF A;  1AIP C;  1EFU B;  3BK6 A;  3D7J A;  4NTN A;  4NTK A;  2DJ6 A;  4FVG A; 
#chains in the Genus database with same CATH homology
 2G64 A;  3QNA A;  1B6Z A;  2OBA A;  1Y13 A;  2DTT A;  3JYG A;  3QN9 A;  3QN0 A;  3I2B A;  3M0N A;  1B66 A;  1GTQ A;  1WIN A;  4NTM A;  2RPB A;  2A0S A;  4FVJ A;  3LX3 A;  3LZE A;  4FVF A;  3BK6 A;  3D7J A;  4NTN A;  4NTK A;  2DJ6 A;  4FVG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2A0SA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations