2CQMA

Solution structure of the mitochondrial ribosomal protein l17 isolog
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
122
structure length
122
Chain Sequence
GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYKGNCLPPLPLPSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the mitochondrial ribosomal protein L17 isolog
rcsb
molecule tags Translation
source organism Homo sapiens
molecule keywords Ribosomal protein L17 isolog
total genus 24
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2005-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 2cqmA01
3CF5K 4IOCK 4IO9K 4WFNK 3PIOK 4UY8N 4WFBK 2ZJRK 3J7ZN 4IOAK 5GADO 5JVGK 4WCEK 2ZJPK 5GAHO 5GAGO 4WF9K 4WFAK 5HL7K 5MLCP 4U67K 5JVHK 2CQMA 5DM7K 1GD8A 5DM6K 3DLLK 3PIPK 2ZJQK 5H1SP 5GAEO
chains in the Genus database with same CATH superfamily
3CF5K 4IOCK 4IO9K 4WFNK 3PIOK 4UY8N 4WFBK 2ZJRK 3J7ZN 4IOAK 5GADO 5JVGK 4WCEK 2ZJPK 5GAHO 5GAGO 4WF9K 4WFAK 5HL7K 5MLCP 4U67K 5JVHK 2CQMA 5DM7K 1GD8A 5DM6K 3DLLK 3PIPK 2ZJQK 5H1SP 5GAEO
chains in the Genus database with same CATH topology
3CF5K 4IOCK 4IO9K 4WFNK 3PIOK 4UY8N 4WFBK 2ZJRK 3J7ZN 4IOAK 5GADO 5JVGK 4WCEK 2ZJPK 5GAHO 5GAGO 4WF9K 4WFAK 5HL7K 5MLCP 4U67K 5JVHK 2CQMA 5DM7K 1GD8A 5DM6K 3DLLK 3PIPK 2ZJQK 5H1SP 5GAEO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CF5 K;  4IOC K;  4IO9 K;  4WFN K;  3PIO K;  4UY8 N;  4WFB K;  2ZJR K;  3J7Z N;  4IOA K;  5GAD O;  5JVG K;  4WCE K;  2ZJP K;  5GAH O;  5GAG O;  4WF9 K;  4WFA K;  5HL7 K;  5MLC P;  4U67 K;  5JVH K;  2CQM A;  5DM7 K;  1GD8 A;  5DM6 K;  3DLL K;  3PIP K;  2ZJQ K;  5H1S P;  5GAE O; 
#chains in the Genus database with same CATH topology
 3CF5 K;  4IOC K;  4IO9 K;  4WFN K;  3PIO K;  4UY8 N;  4WFB K;  2ZJR K;  3J7Z N;  4IOA K;  5GAD O;  5JVG K;  4WCE K;  2ZJP K;  5GAH O;  5GAG O;  4WF9 K;  4WFA K;  5HL7 K;  5MLC P;  4U67 K;  5JVH K;  2CQM A;  5DM7 K;  1GD8 A;  5DM6 K;  3DLL K;  3PIP K;  2ZJQ K;  5H1S P;  5GAE O; 
#chains in the Genus database with same CATH homology
 3CF5 K;  4IOC K;  4IO9 K;  4WFN K;  3PIO K;  4UY8 N;  4WFB K;  2ZJR K;  3J7Z N;  4IOA K;  5GAD O;  5JVG K;  4WCE K;  2ZJP K;  5GAH O;  5GAG O;  4WF9 K;  4WFA K;  5HL7 K;  5MLC P;  4U67 K;  5JVH K;  2CQM A;  5DM7 K;  1GD8 A;  5DM6 K;  3DLL K;  3PIP K;  2ZJQ K;  5H1S P;  5GAE O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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