The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
123
|
sequence length |
359
|
structure length |
354
|
Chain Sequence |
MKAQELGIKIGVFKPGKRNKITDVKGVKVGHVTLIKGKGKLIPGKGPVRTGVTAILPHEGNIYKEKVLAGAFVMNGYSKPVGLIQLWELGTIETPIILTNTLSIGTAVEGLLDYILEENEDIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKRADEDFEEGAVGAGTGMSAFEFKGGIGSASRIVEIEGKKYTVGALVLSNFGRREDLTIAGVPVGLELKNWPGRGSIIMIIATDAPLTGRQLNRVAKRAIVGLARTGGYAYNGSGDIAVAFSTANRIKHYEKEVIEIKALPDSVISPLFKATAEAVEEAIINSLLEARTMDGRDNHVRYALPKEELLRIMRRYGRL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the PH0078 protein from Pyrococcus horikoshii OT3
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Pyrococcus horikoshii
|
| molecule keywords |
361aa long hypothetical D-aminopeptidase
|
| total genus |
123
|
| structure length |
354
|
| sequence length |
359
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2006-06-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03576 | Peptidase_S58 | Peptidase family S58 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 4-Layer Sandwich | L-amino peptidase D-ALA esterase/amidase | L-amino peptidase D-ALA esterase/amidase |
#chains in the Genus database with same CATH superfamily 1VZ7 A; 3S3U A; 3NFB A; 3IT6 A; 3N33 A; 1B65 A; 4IHD A; 4IHE A; 2DRH A; 3N5I A; 1VZ6 A; 1VZ8 A; 3IT4 A; 3NDV A; 1VRA A; 2YEP A; 3AXG A; 2V4I A; 2VZK A; 3TM1 A; 3TM2 A; 3N2W A; #chains in the Genus database with same CATH topology 1VZ7 A; 3S3U A; 3NFB A; 3IT6 A; 3N33 A; 1B65 A; 4IHD A; 4IHE A; 2DRH A; 3N5I A; 1VZ6 A; 1VZ8 A; 3IT4 A; 3NDV A; 1VRA A; 2YEP A; 3AXG A; 2V4I A; 2VZK A; 3TM1 A; 3TM2 A; 3N2W A; #chains in the Genus database with same CATH homology 1VZ7 A; 3S3U A; 3NFB A; 3IT6 A; 3N33 A; 1B65 A; 4IHD A; 4IHE A; 2DRH A; 3N5I A; 1VZ6 A; 1VZ8 A; 3IT4 A; 3NDV A; 1VRA A; 2YEP A; 3AXG A; 2V4I A; 2VZK A; 3TM1 A; 3TM2 A; 3N2W A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
