2JA4A

Crystal structure of cd5 domain iii reveals the fold of a group b scavenger cysteine-rich receptor
Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
101
structure length
101
Chain Sequence
AFQPKVQSRLVGGSSICEGTVEVRQGAQWAALCDSSSARSSLRWEEVCREQQCGSVNSYRVLDAGDPTSRGLFCPHQKLSQCHELWERNSYCKKVFVTCQD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of the Third Extracellular Domain of Cd5 Reveals the Fold of a Group B Scavenger Cysteine-Rich Receptor Domain.
pubmed doi rcsb
molecule keywords T-CELL SURFACE GLYCOPROTEIN CD5
molecule tags Immune system
source organism Homo sapiens
total genus 21
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 2006-11-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.250.10 Alpha Beta Roll Mac-2 Binding Protein SRCR-like domain 2ja4A00
2JA4A 5CE1A 5JFBA 2JP0A 1Z8GA 1BY2A 2JOPA 2OY3A 2OYAA 3T2NA 1O5EL 1O5FL 2OTTX 2XRCA 1P57A
chains in the Genus database with same CATH superfamily
2JA4A 5CE1A 5JFBA 2JP0A 1Z8GA 1BY2A 2JOPA 2OY3A 2OYAA 3T2NA 1O5EL 1O5FL 2OTTX 2XRCA 1P57A
chains in the Genus database with same CATH topology
2JA4A 5CE1A 5JFBA 2JP0A 1Z8GA 1BY2A 2JOPA 2OY3A 2OYAA 3T2NA 1O5EL 1O5FL 2OTTX 2XRCA 1P57A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JA4 A;  5CE1 A;  5JFB A;  2JP0 A;  1Z8G A;  1BY2 A;  2JOP A;  2OY3 A;  2OYA A;  3T2N A;  1O5E L;  1O5F L;  2OTT X;  2XRC A;  1P57 A; 
#chains in the Genus database with same CATH topology
 2JA4 A;  5CE1 A;  5JFB A;  2JP0 A;  1Z8G A;  1BY2 A;  2JOP A;  2OY3 A;  2OYA A;  3T2N A;  1O5E L;  1O5F L;  2OTT X;  2XRC A;  1P57 A; 
#chains in the Genus database with same CATH homology
 2JA4 A;  5CE1 A;  5JFB A;  2JP0 A;  1Z8G A;  1BY2 A;  2JOP A;  2OY3 A;  2OYA A;  3T2N A;  1O5E L;  1O5F L;  2OTT X;  2XRC A;  1P57 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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