2JA4 | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	101
structure length	101
Chain Sequence	AFQPKVQSRLVGGSSICEGTVEVRQGAQWAALCDSSSARSSLRWEEVCREQQCGSVNSYRVLDAGDPTSRGLFCPHQKLSQCHELWERNSYCKKVFVTCQD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 101 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Crystal Structure of the Third Extracellular Domain of Cd5 Reveals the Fold of a Group B Scavenger Cysteine-Rich Receptor Domain. pubmed doi rcsb
molecule keywords	T-CELL SURFACE GLYCOPROTEIN CD5
molecule tags	Immune system
source organism	Homo sapiens
total genus	21
structure length	101
sequence length	101
ec nomenclature
pdb deposition date	2006-11-21

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.250.10	Alpha Beta	Roll	Mac-2 Binding Protein	SRCR-like domain	2ja4A00

2JA4A 5CE1A 5JFBA 2JP0A 1Z8GA 1BY2A 2JOPA 2OY3A 2OYAA 3T2NA 1O5EL 1O5FL 2OTTX 2XRCA 1P57A
chains in the Genus database with same CATH superfamily

2JA4A 5CE1A 5JFBA 2JP0A 1Z8GA 1BY2A 2JOPA 2OY3A 2OYAA 3T2NA 1O5EL 1O5FL 2OTTX 2XRCA 1P57A
chains in the Genus database with same CATH topology

2JA4A 5CE1A 5JFBA 2JP0A 1Z8GA 1BY2A 2JOPA 2OY3A 2OYAA 3T2NA 1O5EL 1O5FL 2OTTX 2XRCA 1P57A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2JA4 A;  5CE1 A;  5JFB A;  2JP0 A;  1Z8G A;  1BY2 A;  2JOP A;  2OY3 A;  2OYA A;  3T2N A;  1O5E L;  1O5F L;  2OTT X;  2XRC A;  1P57 A; 
#chains in the Genus database with same CATH topology
 2JA4 A;  5CE1 A;  5JFB A;  2JP0 A;  1Z8G A;  1BY2 A;  2JOP A;  2OY3 A;  2OYA A;  3T2N A;  1O5E L;  1O5F L;  2OTT X;  2XRC A;  1P57 A; 
#chains in the Genus database with same CATH homology
 2JA4 A;  5CE1 A;  5JFB A;  2JP0 A;  1Z8G A;  1BY2 A;  2JOP A;  2OY3 A;  2OYA A;  3T2N A;  1O5E L;  1O5F L;  2OTT X;  2XRC A;  1P57 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2JA4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization