2JP0A

Solution structure of the n-terminal extraceullular domain of the lymphocyte receptor cd5 calculated using inferential structure determination (isd)
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
110
structure length
110
Chain Sequence
RLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGDPLSLGPFLKTYTPQSSIICYGQLGSFSNCSHSRNDMCHSLGLTCLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords T-cell surface glycoprotein CD5
publication title Three-dimensional solution structure and conformational plasticity of the N-terminal scavenger receptor cysteine-rich domain of human CD5
pubmed doi rcsb
source organism Homo sapiens
total genus 24
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2007-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00530 SRCR Scavenger receptor cysteine-rich domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.250.10 Alpha Beta Roll Mac-2 Binding Protein SRCR-like domain 2jp0A00
2JP0A 2OYAA 1O5EL 3T2NA 1BY2A 2JOPA 1Z8GA 2OTTX 5CE1A 1P57A 2OY3A 2XRCA 1O5FL 5JFBA 2JA4A
chains in the Genus database with same CATH superfamily
2JP0A 2OYAA 1O5EL 3T2NA 1BY2A 2JOPA 1Z8GA 2OTTX 5CE1A 1P57A 2OY3A 2XRCA 1O5FL 5JFBA 2JA4A
chains in the Genus database with same CATH topology
2JP0A 2OYAA 1O5EL 3T2NA 1BY2A 2JOPA 1Z8GA 2OTTX 5CE1A 1P57A 2OY3A 2XRCA 1O5FL 5JFBA 2JA4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JP0 A;  2OYA A;  1O5E L;  3T2N A;  1BY2 A;  2JOP A;  1Z8G A;  2OTT X;  5CE1 A;  1P57 A;  2OY3 A;  2XRC A;  1O5F L;  5JFB A;  2JA4 A; 
#chains in the Genus database with same CATH topology
 2JP0 A;  2OYA A;  1O5E L;  3T2N A;  1BY2 A;  2JOP A;  1Z8G A;  2OTT X;  5CE1 A;  1P57 A;  2OY3 A;  2XRC A;  1O5F L;  5JFB A;  2JA4 A; 
#chains in the Genus database with same CATH homology
 2JP0 A;  2OYA A;  1O5E L;  3T2N A;  1BY2 A;  2JOP A;  1Z8G A;  2OTT X;  5CE1 A;  1P57 A;  2OY3 A;  2XRC A;  1O5F L;  5JFB A;  2JA4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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