2OBA | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	120
structure length	120
Chain Sequence	SHMELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRGD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 120 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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120 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Pseudomonas aeruginosa 6-pyruvoyl tetrahydrobiopterin synthase rcsb
molecule keywords	Probable 6-pyruvoyl tetrahydrobiopterin synthase
molecule tags	Lyase
source organism	Pseudomonas aeruginosa
total genus	35
structure length	120
sequence length	120
chains with identical sequence	B, C, D, E, F
ec nomenclature	ec 4.2.3.12: 6-pyruvoyltetrahydropterin synthase.
pdb deposition date	2006-12-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01242	PTPS	6-pyruvoyl tetrahydropterin synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.479.10	Alpha Beta	2-Layer Sandwich	Tetrahydropterin Synthase; Chain A	Tetrahydropterin Synthase; Chain A	2obaA00

2DJ6A 3QN9A 1B66A 2G64A 4NTNA 3QNAA 3QN0A 4NTMA 3LX3A 4NTKA 2OBAA 1Y13A 3JYGA 3M0NA 1GTQA 3D7JA 3LZEA 1B6ZA 2A0SA 3I2BA 2DTTA
chains in the Genus database with same CATH superfamily

2DJ6A 3BK6A 3QN9A 1B66A 4FVFA 2G64A 2RPBA 4NTNA 3QNAA 4Q7JA 3QN0A 4NTMA 3LX3A 1XB2B 4NTKA 2OBAA 1EFUB 1AIPC 1Y13A 3JYGA 4FVJA 1TFEA 3M0NA 1GTQA 4FVGA 3D7JA 3LZEA 1B6ZA 2A0SA 3I2BA 2DTTA 1WINA
chains in the Genus database with same CATH topology

2DJ6A 3BK6A 3QN9A 1B66A 4FVFA 2G64A 2RPBA 4NTNA 3QNAA 3QN0A 4NTMA 3LX3A 4NTKA 2OBAA 1Y13A 3JYGA 4FVJA 3M0NA 1GTQA 4FVGA 3D7JA 3LZEA 1B6ZA 2A0SA 3I2BA 2DTTA 1WINA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2DJ6 A;  3QN9 A;  1B66 A;  2G64 A;  4NTN A;  3QNA A;  3QN0 A;  4NTM A;  3LX3 A;  4NTK A;  2OBA A;  1Y13 A;  3JYG A;  3M0N A;  1GTQ A;  3D7J A;  3LZE A;  1B6Z A;  2A0S A;  3I2B A;  2DTT A; 
#chains in the Genus database with same CATH topology
 2DJ6 A;  3BK6 A;  3QN9 A;  1B66 A;  4FVF A;  2G64 A;  2RPB A;  4NTN A;  3QNA A;  4Q7J A;  3QN0 A;  4NTM A;  3LX3 A;  1XB2 B;  4NTK A;  2OBA A;  1EFU B;  1AIP C;  1Y13 A;  3JYG A;  4FVJ A;  1TFE A;  3M0N A;  1GTQ A;  4FVG A;  3D7J A;  3LZE A;  1B6Z A;  2A0S A;  3I2B A;  2DTT A;  1WIN A; 
#chains in the Genus database with same CATH homology
 2DJ6 A;  3BK6 A;  3QN9 A;  1B66 A;  4FVF A;  2G64 A;  2RPB A;  4NTN A;  3QNA A;  3QN0 A;  4NTM A;  3LX3 A;  4NTK A;  2OBA A;  1Y13 A;  3JYG A;  4FVJ A;  3M0N A;  1GTQ A;  4FVG A;  3D7J A;  3LZE A;  1B6Z A;  2A0S A;  3I2B A;  2DTT A;  1WIN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2OBAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations