2RL8A

Crystal structure cation-dependent mannose 6-phosphate receptor at ph 6.5 bound to m6p
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
151
structure length
148
Chain Sequence
KTCDLVGEKGKESEKELALLKRLTPLFQKSFESTVGDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights into the Mechanism of pH-dependent Ligand Binding and Release by the Cation-dependent Mannose 6-Phosphate Receptor.
pubmed doi rcsb
molecule tags Protein transport, sugar binding protein
source organism Bos taurus
molecule keywords Cation-dependent mannose-6-phosphate receptor
total genus 38
structure length 148
sequence length 151
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-10-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 2rl8A00
1E6FA 2M68A 3K41A 3K43A 2KVBA 2LVXA 5IEIA 1SZ0A 1KEOA 2CNJD 2V5OA 4XQMA 2L29A 2RL7A 2LLAA 2RLBA 2KVAA 1GP0A 1GQBA 2L2AA 2V5NA 2N1HA 2RL9A 1Q25A 2L21A 2L2GA 3AIHA 1GP3A 1M6PA 3K42A 3CY4A 2RL8A 2M6TA 1SYOA 1C39A
chains in the Genus database with same CATH superfamily
1E6FA 2M68A 3K41A 3K43A 2KVBA 2LVXA 5IEIA 1SZ0A 1KEOA 2CNJD 2V5OA 4XQMA 2L29A 2RL7A 2LLAA 2RLBA 2KVAA 1GP0A 1GQBA 2L2AA 2V5NA 2N1HA 2RL9A 1Q25A 2L21A 2L2GA 3AIHA 1GP3A 1M6PA 3K42A 3CY4A 2RL8A 2M6TA 1SYOA 1C39A
chains in the Genus database with same CATH topology
1E6FA 2M68A 3K41A 3K43A 2KVBA 2LVXA 5IEIA 1SZ0A 1KEOA 2CNJD 2V5OA 4XQMA 2L29A 2RL7A 2LLAA 2RLBA 2KVAA 1GP0A 1GQBA 2L2AA 2V5NA 2N1HA 2RL9A 1Q25A 2L21A 2L2GA 3AIHA 1GP3A 1M6PA 3K42A 3CY4A 2RL8A 2M6TA 1SYOA 1C39A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E6F A;  2M68 A;  3K41 A;  3K43 A;  2KVB A;  2LVX A;  5IEI A;  1SZ0 A;  1KEO A;  2CNJ D;  2V5O A;  4XQM A;  2L29 A;  2RL7 A;  2LLA A;  2RLB A;  2KVA A;  1GP0 A;  1GQB A;  2L2A A;  2V5N A;  2N1H A;  2RL9 A;  1Q25 A;  2L21 A;  2L2G A;  3AIH A;  1GP3 A;  1M6P A;  3K42 A;  3CY4 A;  2RL8 A;  2M6T A;  1SYO A;  1C39 A; 
#chains in the Genus database with same CATH topology
 1E6F A;  2M68 A;  3K41 A;  3K43 A;  2KVB A;  2LVX A;  5IEI A;  1SZ0 A;  1KEO A;  2CNJ D;  2V5O A;  4XQM A;  2L29 A;  2RL7 A;  2LLA A;  2RLB A;  2KVA A;  1GP0 A;  1GQB A;  2L2A A;  2V5N A;  2N1H A;  2RL9 A;  1Q25 A;  2L21 A;  2L2G A;  3AIH A;  1GP3 A;  1M6P A;  3K42 A;  3CY4 A;  2RL8 A;  2M6T A;  1SYO A;  1C39 A; 
#chains in the Genus database with same CATH homology
 1E6F A;  2M68 A;  3K41 A;  3K43 A;  2KVB A;  2LVX A;  5IEI A;  1SZ0 A;  1KEO A;  2CNJ D;  2V5O A;  4XQM A;  2L29 A;  2RL7 A;  2LLA A;  2RLB A;  2KVA A;  1GP0 A;  1GQB A;  2L2A A;  2V5N A;  2N1H A;  2RL9 A;  1Q25 A;  2L21 A;  2L2G A;  3AIH A;  1GP3 A;  1M6P A;  3K42 A;  3CY4 A;  2RL8 A;  2M6T A;  1SYO A;  1C39 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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