2RL9A

Crystal structure cation-dependent mannose 6-phosphate receptor at ph 6.5 bound to trimannoside
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
151
structure length
146
Chain Sequence
KTCDLVGEKGKESEKELALLKRLTPLFQKSFESTDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into the mechanism of pH-dependent ligand binding and release by the cation-dependent mannose 6-phosphate receptor.
pubmed doi rcsb
molecule tags Protein transport, sugar binding protein
source organism Bos taurus
molecule keywords Cation-dependent mannose-6-phosphate receptor
total genus 39
structure length 146
sequence length 151
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-10-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 2rl9A00
5IEIA 2V5OA 2RLBA 3K42A 1SYOA 1GP3A 2KVBA 1KEOA 1GQBA 1GP0A 1C39A 2L29A 2LVXA 2L21A 2L2GA 2L2AA 3AIHA 2N1HA 2LLAA 4XQMA 2M6TA 3K43A 1Q25A 3K41A 1M6PA 1SZ0A 2RL7A 2RL9A 2M68A 3CY4A 1E6FA 2RL8A 2V5NA 2CNJD 2KVAA
chains in the Genus database with same CATH superfamily
5IEIA 2V5OA 2RLBA 3K42A 1SYOA 1GP3A 2KVBA 1KEOA 1GQBA 1GP0A 1C39A 2L29A 2LVXA 2L21A 2L2GA 2L2AA 3AIHA 2N1HA 2LLAA 4XQMA 2M6TA 3K43A 1Q25A 3K41A 1M6PA 1SZ0A 2RL7A 2RL9A 2M68A 3CY4A 1E6FA 2RL8A 2V5NA 2CNJD 2KVAA
chains in the Genus database with same CATH topology
5IEIA 2V5OA 2RLBA 3K42A 1SYOA 1GP3A 2KVBA 1KEOA 1GQBA 1GP0A 1C39A 2L29A 2LVXA 2L21A 2L2GA 2L2AA 3AIHA 2N1HA 2LLAA 4XQMA 2M6TA 3K43A 1Q25A 3K41A 1M6PA 1SZ0A 2RL7A 2RL9A 2M68A 3CY4A 1E6FA 2RL8A 2V5NA 2CNJD 2KVAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IEI A;  2V5O A;  2RLB A;  3K42 A;  1SYO A;  1GP3 A;  2KVB A;  1KEO A;  1GQB A;  1GP0 A;  1C39 A;  2L29 A;  2LVX A;  2L21 A;  2L2G A;  2L2A A;  3AIH A;  2N1H A;  2LLA A;  4XQM A;  2M6T A;  3K43 A;  1Q25 A;  3K41 A;  1M6P A;  1SZ0 A;  2RL7 A;  2RL9 A;  2M68 A;  3CY4 A;  1E6F A;  2RL8 A;  2V5N A;  2CNJ D;  2KVA A; 
#chains in the Genus database with same CATH topology
 5IEI A;  2V5O A;  2RLB A;  3K42 A;  1SYO A;  1GP3 A;  2KVB A;  1KEO A;  1GQB A;  1GP0 A;  1C39 A;  2L29 A;  2LVX A;  2L21 A;  2L2G A;  2L2A A;  3AIH A;  2N1H A;  2LLA A;  4XQM A;  2M6T A;  3K43 A;  1Q25 A;  3K41 A;  1M6P A;  1SZ0 A;  2RL7 A;  2RL9 A;  2M68 A;  3CY4 A;  1E6F A;  2RL8 A;  2V5N A;  2CNJ D;  2KVA A; 
#chains in the Genus database with same CATH homology
 5IEI A;  2V5O A;  2RLB A;  3K42 A;  1SYO A;  1GP3 A;  2KVB A;  1KEO A;  1GQB A;  1GP0 A;  1C39 A;  2L29 A;  2LVX A;  2L21 A;  2L2G A;  2L2A A;  3AIH A;  2N1H A;  2LLA A;  4XQM A;  2M6T A;  3K43 A;  1Q25 A;  3K41 A;  1M6P A;  1SZ0 A;  2RL7 A;  2RL9 A;  2M68 A;  3CY4 A;  1E6F A;  2RL8 A;  2V5N A;  2CNJ D;  2KVA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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