2RL9A

Crystal structure cation-dependent mannose 6-phosphate receptor at ph 6.5 bound to trimannoside
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
151
structure length
146
Chain Sequence
KTCDLVGEKGKESEKELALLKRLTPLFQKSFESTDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into the mechanism of pH-dependent ligand binding and release by the cation-dependent mannose 6-phosphate receptor.
pubmed doi rcsb
molecule tags Protein transport, sugar binding protein
source organism Bos taurus
molecule keywords Cation-dependent mannose-6-phosphate receptor
total genus 39
structure length 146
sequence length 151
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-10-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 2rl9A00
1KEOA 2N1HA 2KVAA 2RL9A 2L2AA 1GP3A 2LLAA 2CNJD 1M6PA 2L21A 3K43A 2M6TA 1SYOA 2L29A 2RL8A 2RLBA 3CY4A 1Q25A 2V5OA 4XQMA 2KVBA 1GP0A 2V5NA 1SZ0A 2L2GA 3AIHA 3K41A 3K42A 1GQBA 1E6FA 2RL7A 2LVXA 2M68A 5IEIA 1C39A
chains in the Genus database with same CATH superfamily
1KEOA 2N1HA 2KVAA 2RL9A 2L2AA 1GP3A 2LLAA 2CNJD 1M6PA 2L21A 3K43A 2M6TA 1SYOA 2L29A 2RL8A 2RLBA 3CY4A 1Q25A 2V5OA 4XQMA 2KVBA 1GP0A 2V5NA 1SZ0A 2L2GA 3AIHA 3K41A 3K42A 1GQBA 1E6FA 2RL7A 2LVXA 2M68A 5IEIA 1C39A
chains in the Genus database with same CATH topology
1KEOA 2N1HA 2KVAA 2RL9A 2L2AA 1GP3A 2LLAA 2CNJD 1M6PA 2L21A 3K43A 2M6TA 1SYOA 2L29A 2RL8A 2RLBA 3CY4A 1Q25A 2V5OA 4XQMA 2KVBA 1GP0A 2V5NA 1SZ0A 2L2GA 3AIHA 3K41A 3K42A 1GQBA 1E6FA 2RL7A 2LVXA 2M68A 5IEIA 1C39A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KEO A;  2N1H A;  2KVA A;  2RL9 A;  2L2A A;  1GP3 A;  2LLA A;  2CNJ D;  1M6P A;  2L21 A;  3K43 A;  2M6T A;  1SYO A;  2L29 A;  2RL8 A;  2RLB A;  3CY4 A;  1Q25 A;  2V5O A;  4XQM A;  2KVB A;  1GP0 A;  2V5N A;  1SZ0 A;  2L2G A;  3AIH A;  3K41 A;  3K42 A;  1GQB A;  1E6F A;  2RL7 A;  2LVX A;  2M68 A;  5IEI A;  1C39 A; 
#chains in the Genus database with same CATH topology
 1KEO A;  2N1H A;  2KVA A;  2RL9 A;  2L2A A;  1GP3 A;  2LLA A;  2CNJ D;  1M6P A;  2L21 A;  3K43 A;  2M6T A;  1SYO A;  2L29 A;  2RL8 A;  2RLB A;  3CY4 A;  1Q25 A;  2V5O A;  4XQM A;  2KVB A;  1GP0 A;  2V5N A;  1SZ0 A;  2L2G A;  3AIH A;  3K41 A;  3K42 A;  1GQB A;  1E6F A;  2RL7 A;  2LVX A;  2M68 A;  5IEI A;  1C39 A; 
#chains in the Genus database with same CATH homology
 1KEO A;  2N1H A;  2KVA A;  2RL9 A;  2L2A A;  1GP3 A;  2LLA A;  2CNJ D;  1M6P A;  2L21 A;  3K43 A;  2M6T A;  1SYO A;  2L29 A;  2RL8 A;  2RLB A;  3CY4 A;  1Q25 A;  2V5O A;  4XQM A;  2KVB A;  1GP0 A;  2V5N A;  1SZ0 A;  2L2G A;  3AIH A;  3K41 A;  3K42 A;  1GQB A;  1E6F A;  2RL7 A;  2LVX A;  2M68 A;  5IEI A;  1C39 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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