2RPB | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	113
structure length	113
Chain Sequence	GSDHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 113 atoms

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113 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The solution structure of membrane protein rcsb
molecule keywords	hypothetical membrane protein
molecule tags	Membrane protein
source organism	Pyrococcus horikoshii
total genus	20
structure length	113
sequence length	113
ec nomenclature
pdb deposition date	2008-05-13

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.479.30	Alpha Beta	2-Layer Sandwich	Tetrahydropterin Synthase; Chain A	Tetrahydropterin Synthase; Chain A	2rpbA00

1WINA 4FVFA 4FVJA 4FVGA 3BK6A 2RPBA
chains in the Genus database with same CATH superfamily

3QN0A 1WINA 3LZEA 4FVJA 2DJ6A 1TFEA 1AIPC 2OBAA 3BK6A 2G64A 3M0NA 2A0SA 2DTTA 1Y13A 2RPBA 1B6ZA 1GTQA 3D7JA 1B66A 4NTMA 4FVGA 3JYGA 3I2BA 4Q7JA 4FVFA 3QNAA 3QN9A 3LX3A 4NTKA 4NTNA 1EFUB 1XB2B
chains in the Genus database with same CATH topology

3QN0A 1WINA 3LZEA 4FVJA 2DJ6A 2OBAA 3M0NA 3BK6A 2G64A 2A0SA 2DTTA 1Y13A 2RPBA 1B6ZA 1GTQA 3D7JA 1B66A 4NTMA 4FVGA 3JYGA 3I2BA 4FVFA 3QNAA 3QN9A 3LX3A 4NTKA 4NTNA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1WIN A;  4FVF A;  4FVJ A;  4FVG A;  3BK6 A;  2RPB A; 
#chains in the Genus database with same CATH topology
 3QN0 A;  1WIN A;  3LZE A;  4FVJ A;  2DJ6 A;  1TFE A;  1AIP C;  2OBA A;  3BK6 A;  2G64 A;  3M0N A;  2A0S A;  2DTT A;  1Y13 A;  2RPB A;  1B6Z A;  1GTQ A;  3D7J A;  1B66 A;  4NTM A;  4FVG A;  3JYG A;  3I2B A;  4Q7J A;  4FVF A;  3QNA A;  3QN9 A;  3LX3 A;  4NTK A;  4NTN A;  1EFU B;  1XB2 B; 
#chains in the Genus database with same CATH homology
 3QN0 A;  1WIN A;  3LZE A;  4FVJ A;  2DJ6 A;  2OBA A;  3M0N A;  3BK6 A;  2G64 A;  2A0S A;  2DTT A;  1Y13 A;  2RPB A;  1B6Z A;  1GTQ A;  3D7J A;  1B66 A;  4NTM A;  4FVG A;  3JYG A;  3I2B A;  4FVF A;  3QNA A;  3QN9 A;  3LX3 A;  4NTK A;  4NTN A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2RPBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN