The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
248
|
sequence length |
564
|
structure length |
564
|
Chain Sequence |
MKFSEFRYERPNIEKLKASFQQALQSFQKASNAEEQNEAMKEINQLRNDFSTMAQICYIRHTIDTNDEFYKQEQDFFDEVEPIVKGLVNDYYRALVSSPFRSQLEGKWGKQLFALAEAELKTYSPDIVEDLQLENKLTSEYTKLVASAKIFFEGEERTLAQLQPFVESPDRDMRKRASEARFTFFQEHEEKFDEIYDQLVKVRTAIAQKLGFKNFVELGYARLGRTDYNAEMVAKFRKQVEKHIVPIAVKLRERQRERIGVEKLKYYDEAFVFPTGNPMPKGDANWIIENGKKMYEELSPETGEFFRYMIEHELMDLVAKKGKASGGYCTYIENYKAPFIFSNFTGTSGDIDVLTHEAGHAFQVYESRHYEIPEYNWPTLEACEIHSMSMEFFTWPWMKLFFKEDAEKYQFYHLSDALLFLPYGVAVDEFQHFVYENPNATPAERKQAWRAIERKYMPTKDYDGNDYLERGGFWQRQSHIYTTAFYYIDYTLAQICAFQFWKRSRENYKEAWNDYLTLCRQGGSKPFTELVRVANLISPFEDGCVQSVVGGIEGWLNSVDDQSL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The exquisite structure and reaction mechanism of bacterial Pz-peptidase A toward collagenous peptides: X-ray crystallographic structure analysis of PZ-peptidase a reveals differences from mammalian thimet oligopeptidase.
pubmed doi rcsb |
| molecule tags |
Hydrolase/hydrolase inhibitor
|
| molecule keywords |
Oligopeptidase
|
| total genus |
248
|
| structure length |
564
|
| sequence length |
564
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2010-04-25 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Neurolysin; domain 3 | Neurolysin; domain 3 |
#chains in the Genus database with same CATH superfamily 2H1J A; 3AHN A; 3AHM A; 3HQ2 A; 3DWC A; 1KA4 A; 3HOA A; 1K9X A; 3SKS A; 2H1N A; 1KA2 A; 3AHO A; 5E3X A; #chains in the Genus database with same CATH topology 1S4B P; 3AHN A; 3AHM A; 3HOA A; 3SKS A; 4FXY P; 3CE2 A; 2QR4 A; 2H1J A; 1I1I P; 3DWC A; 1K9X A; 4KA8 A; 5E3X A; 4KA7 A; 1Y79 1; 2O3E A; 2O36 A; 1KA2 A; 3AHO A; 4PUT A; 3HQ2 A; 1KA4 A; 5L43 A; 2H1N A; 5L44 A; #chains in the Genus database with same CATH homology 3AHN A; 3AHM A; 3HOA A; 3SKS A; 3CE2 A; 2QR4 A; 2H1J A; 3DWC A; 1K9X A; 4KA8 A; 5E3X A; 4KA7 A; 1Y79 1; 1KA2 A; 3AHO A; 4PUT A; 3HQ2 A; 1KA4 A; 5L43 A; 2H1N A; 5L44 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
