3CY4A

Crystal structure cation-dependent mannose 6-phosphate receptor at ph 7.4
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
151
structure length
151
Chain Sequence
KTCDLVGEKGKESEKELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights into the Mechanism of pH-dependent Ligand Binding and Release by the Cation-dependent Mannose 6-Phosphate Receptor.
pubmed doi rcsb
molecule tags Protein transport, sugar binding protein
source organism Bos taurus
molecule keywords Cation-dependent mannose-6-phosphate receptor
total genus 40
structure length 151
sequence length 151
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-04-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 3cy4A00
2V5OA 3K43A 2RL9A 2N1HA 1E6FA 2LVXA 2M68A 1Q25A 4XQMA 2RL7A 1SYOA 1GQBA 3CY4A 1GP3A 2L2GA 2L2AA 1C39A 1KEOA 5IEIA 2M6TA 2RL8A 1GP0A 2V5NA 3K42A 2KVBA 2L29A 1SZ0A 3K41A 3AIHA 2L21A 1M6PA 2CNJD 2LLAA 2KVAA 2RLBA
chains in the Genus database with same CATH superfamily
2V5OA 3K43A 2RL9A 2N1HA 1E6FA 2LVXA 2M68A 1Q25A 4XQMA 2RL7A 1SYOA 1GQBA 3CY4A 1GP3A 2L2GA 2L2AA 1C39A 1KEOA 5IEIA 2M6TA 2RL8A 1GP0A 2V5NA 3K42A 2KVBA 2L29A 1SZ0A 3K41A 3AIHA 2L21A 1M6PA 2CNJD 2LLAA 2KVAA 2RLBA
chains in the Genus database with same CATH topology
2V5OA 3K43A 2RL9A 2N1HA 1E6FA 2LVXA 2M68A 1Q25A 4XQMA 2RL7A 1SYOA 1GQBA 3CY4A 1GP3A 2L2GA 2L2AA 1C39A 1KEOA 5IEIA 2M6TA 2RL8A 1GP0A 2V5NA 3K42A 2KVBA 2L29A 1SZ0A 3K41A 3AIHA 2L21A 1M6PA 2CNJD 2LLAA 2KVAA 2RLBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V5O A;  3K43 A;  2RL9 A;  2N1H A;  1E6F A;  2LVX A;  2M68 A;  1Q25 A;  4XQM A;  2RL7 A;  1SYO A;  1GQB A;  3CY4 A;  1GP3 A;  2L2G A;  2L2A A;  1C39 A;  1KEO A;  5IEI A;  2M6T A;  2RL8 A;  1GP0 A;  2V5N A;  3K42 A;  2KVB A;  2L29 A;  1SZ0 A;  3K41 A;  3AIH A;  2L21 A;  1M6P A;  2CNJ D;  2LLA A;  2KVA A;  2RLB A; 
#chains in the Genus database with same CATH topology
 2V5O A;  3K43 A;  2RL9 A;  2N1H A;  1E6F A;  2LVX A;  2M68 A;  1Q25 A;  4XQM A;  2RL7 A;  1SYO A;  1GQB A;  3CY4 A;  1GP3 A;  2L2G A;  2L2A A;  1C39 A;  1KEO A;  5IEI A;  2M6T A;  2RL8 A;  1GP0 A;  2V5N A;  3K42 A;  2KVB A;  2L29 A;  1SZ0 A;  3K41 A;  3AIH A;  2L21 A;  1M6P A;  2CNJ D;  2LLA A;  2KVA A;  2RLB A; 
#chains in the Genus database with same CATH homology
 2V5O A;  3K43 A;  2RL9 A;  2N1H A;  1E6F A;  2LVX A;  2M68 A;  1Q25 A;  4XQM A;  2RL7 A;  1SYO A;  1GQB A;  3CY4 A;  1GP3 A;  2L2G A;  2L2A A;  1C39 A;  1KEO A;  5IEI A;  2M6T A;  2RL8 A;  1GP0 A;  2V5N A;  3K42 A;  2KVB A;  2L29 A;  1SZ0 A;  3K41 A;  3AIH A;  2L21 A;  1M6P A;  2CNJ D;  2LLA A;  2KVA A;  2RLB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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