3IT4 | Genus

Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	193
structure length	193
Chain Sequence	TTRLLRAQGVTAPAGFRAAGVAAGIKASGALDLALVFNEGPDYAAAGVFTRNQVKAAPVLWTQQVLTTGRLRAVILNSGGANACTGPAGFADTHATAEAVAAALSDWGTETGAIEVAVCSTGLIGDRLPMDKLLAGVAHVVHEMHGGLVGGDEAAHAIMTTDNVPKQVALHHHDNWTVGGMAKGAGMLAPSLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 193 atoms

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193 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The molecular structure of ornithine acetyltransferase from Mycobacterium tuberculosis bound to ornithine, a competitive inhibitor. pubmed doi rcsb
molecule keywords	Arginine biosynthesis bifunctional protein argJ alpha chain
molecule tags	Transferase
source organism	Mycobacterium tuberculosis
total genus	51
structure length	193
sequence length	193
chains with identical sequence	C
ec nomenclature	ec 2.3.1.1: Amino-acid N-acetyltransferase.
pdb deposition date	2009-08-27

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.70.12	Alpha Beta	4-Layer Sandwich	L-amino peptidase D-ALA esterase/amidase	L-amino peptidase D-ALA esterase/amidase	3it4A00

3S3UA 3TM1A 3NFBA 3N33A 3TM2A 4IHEA 1VZ8A 1VZ6A 3AXGA 2VZKA 4IHDA 3IT4A 1VRAA 3NDVA 1VZ7A 3N2WA 1B65A 3IT6A 2YEPA 2V4IA 2DRHA 3N5IA
chains in the Genus database with same CATH superfamily

3S3UA 3TM1A 3NFBA 3N33A 3TM2A 4IHEA 1VZ8A 1VZ6A 3AXGA 2VZKA 4IHDA 3IT4A 1VRAA 3NDVA 1VZ7A 3N2WA 1B65A 3IT6A 2YEPA 2V4IA 2DRHA 3N5IA
chains in the Genus database with same CATH topology

3S3UA 3TM1A 3NFBA 3N33A 3TM2A 4IHEA 1VZ8A 1VZ6A 3AXGA 2VZKA 4IHDA 3IT4A 1VRAA 3NDVA 1VZ7A 3N2WA 1B65A 3IT6A 2YEPA 2V4IA 2DRHA 3N5IA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3S3U A;  3TM1 A;  3NFB A;  3N33 A;  3TM2 A;  4IHE A;  1VZ8 A;  1VZ6 A;  3AXG A;  2VZK A;  4IHD A;  3IT4 A;  1VRA A;  3NDV A;  1VZ7 A;  3N2W A;  1B65 A;  3IT6 A;  2YEP A;  2V4I A;  2DRH A;  3N5I A; 
#chains in the Genus database with same CATH topology
 3S3U A;  3TM1 A;  3NFB A;  3N33 A;  3TM2 A;  4IHE A;  1VZ8 A;  1VZ6 A;  3AXG A;  2VZK A;  4IHD A;  3IT4 A;  1VRA A;  3NDV A;  1VZ7 A;  3N2W A;  1B65 A;  3IT6 A;  2YEP A;  2V4I A;  2DRH A;  3N5I A; 
#chains in the Genus database with same CATH homology
 3S3U A;  3TM1 A;  3NFB A;  3N33 A;  3TM2 A;  4IHE A;  1VZ8 A;  1VZ6 A;  3AXG A;  2VZK A;  4IHD A;  3IT4 A;  1VRA A;  3NDV A;  1VZ7 A;  3N2W A;  1B65 A;  3IT6 A;  2YEP A;  2V4I A;  2DRH A;  3N5I A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3IT4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN