3N2WA

Crystal structure of the n-terminal beta-aminopeptidase bapa from sphingosinicella xenopeptidilytica
Total Genus 110

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
371
structure length
367
Chain Sequence
GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKPSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV3 (166-169)3H1 (4-7)TI1 (16-19)3H2 (21-23)AH5 (318-342)TII1 (24-27)S1 (28-36)TI3 (59-62)AH3 (149-158)3H4 (170-172)TII2 (42-45)TIV1 (43-46)TI7 (141-144)S2 (48-56)TI6 (137-140)AH2 (102-117)TI5 (136-139)TI2 (56-59)S3 (65-75)S5 (90-92)AH1 (82-88)S4 (78-80)TIV2 (126-129)TII3 (79-82)S11 (196-206)S6 (95-99)3H3 (120-125)S7 (130-134)S9 (180-181)TI8 (172-175)S8 (176-177)TIV4 (176-179)3H5 (211-213)3H6 (350-351)TI9 (221-224)AH4 (263-280)S12 (215-216)S13 (219-220)TI10 (222-225)S14 (231-232)S15 (235-236)TI11 (239-242)TII4 (241-244)O2 (259-261)TIV8 (309-312)S17 (289-301)TII5 (302-305)S19 (352-354)S10 (183-193)O1 (75-77)TI4 (99-102)S16 (251-257)TI14 (314-317)S18 (346-347)TI12 (285-288)AH6 (359-369)Updating...
connected with : NaN
publication title Autoproteolytic and catalytic mechanisms for the beta-aminopeptidase BapA--a member of the Ntn hydrolase family.
pubmed doi rcsb
molecule tags Hydrolase
source organism Sphingosinicella xenopeptidilytica
molecule keywords Beta-peptidyl aminopeptidase
total genus 110
structure length 367
sequence length 371
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.25: Beta-peptidyl aminopeptidase.
pdb deposition date 2010-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03576 Peptidase_S58 Peptidase family S58
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.70.12 Alpha Beta 4-Layer Sandwich L-amino peptidase D-ALA esterase/amidase L-amino peptidase D-ALA esterase/amidase 3n2wA00
1VZ6A 3N33A 3IT4A 3N2WA 1B65A 4IHEA 2DRHA 2V4IA 3NFBA 3N5IA 3AXGA 1VZ8A 3TM1A 3TM2A 2YEPA 3IT6A 2VZKA 1VRAA 3NDVA 1VZ7A 4IHDA 3S3UA
chains in the Genus database with same CATH superfamily
1VZ6A 3N33A 3IT4A 3N2WA 1B65A 4IHEA 2DRHA 2V4IA 3NFBA 3N5IA 3AXGA 1VZ8A 3TM1A 3TM2A 2YEPA 3IT6A 2VZKA 1VRAA 3NDVA 1VZ7A 4IHDA 3S3UA
chains in the Genus database with same CATH topology
1VZ6A 3N33A 3IT4A 3N2WA 1B65A 4IHEA 2DRHA 2V4IA 3NFBA 3N5IA 3AXGA 1VZ8A 3TM1A 3TM2A 2YEPA 3IT6A 2VZKA 1VRAA 3NDVA 1VZ7A 4IHDA 3S3UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VZ6 A;  3N33 A;  3IT4 A;  3N2W A;  1B65 A;  4IHE A;  2DRH A;  2V4I A;  3NFB A;  3N5I A;  3AXG A;  1VZ8 A;  3TM1 A;  3TM2 A;  2YEP A;  3IT6 A;  2VZK A;  1VRA A;  3NDV A;  1VZ7 A;  4IHD A;  3S3U A; 
#chains in the Genus database with same CATH topology
 1VZ6 A;  3N33 A;  3IT4 A;  3N2W A;  1B65 A;  4IHE A;  2DRH A;  2V4I A;  3NFB A;  3N5I A;  3AXG A;  1VZ8 A;  3TM1 A;  3TM2 A;  2YEP A;  3IT6 A;  2VZK A;  1VRA A;  3NDV A;  1VZ7 A;  4IHD A;  3S3U A; 
#chains in the Genus database with same CATH homology
 1VZ6 A;  3N33 A;  3IT4 A;  3N2W A;  1B65 A;  4IHE A;  2DRH A;  2V4I A;  3NFB A;  3N5I A;  3AXG A;  1VZ8 A;  3TM1 A;  3TM2 A;  2YEP A;  3IT6 A;  2VZK A;  1VRA A;  3NDV A;  1VZ7 A;  4IHD A;  3S3U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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