3NFBA

Crystal structure of the n-terminal beta-aminopeptidase bapa in complex with hydrolyzed ampicillin
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
371
structure length
367
Chain Sequence
GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKPSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure and inhibition of the beta-aminopeptidase BapA, a new ampicillin-recognizing member of the N-terminal nucleophile hydrolase family
rcsb
molecule tags Hydrolase/inhibitor
source organism Sphingosinicella xenopeptidilytica
molecule keywords Beta-peptidyl aminopeptidase
total genus 115
structure length 367
sequence length 371
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.25: Beta-peptidyl aminopeptidase.
pdb deposition date 2010-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03576 Peptidase_S58 Peptidase family S58
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.70.12 Alpha Beta 4-Layer Sandwich L-amino peptidase D-ALA esterase/amidase L-amino peptidase D-ALA esterase/amidase 3nfbA00
2VZKA 4IHDA 2DRHA 2V4IA 1VZ7A 3N33A 3TM1A 1VZ6A 3N5IA 3IT6A 3N2WA 1VRAA 3NFBA 2YEPA 1B65A 3TM2A 3NDVA 3IT4A 4IHEA 3S3UA 1VZ8A 3AXGA
chains in the Genus database with same CATH superfamily
2VZKA 4IHDA 2DRHA 2V4IA 1VZ7A 3N33A 3TM1A 1VZ6A 3N5IA 3IT6A 3N2WA 1VRAA 3NFBA 2YEPA 1B65A 3TM2A 3NDVA 3IT4A 4IHEA 3S3UA 1VZ8A 3AXGA
chains in the Genus database with same CATH topology
2VZKA 4IHDA 2DRHA 2V4IA 1VZ7A 3N33A 3TM1A 1VZ6A 3N5IA 3IT6A 3N2WA 1VRAA 3NFBA 2YEPA 1B65A 3TM2A 3NDVA 3IT4A 4IHEA 3S3UA 1VZ8A 3AXGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VZK A;  4IHD A;  2DRH A;  2V4I A;  1VZ7 A;  3N33 A;  3TM1 A;  1VZ6 A;  3N5I A;  3IT6 A;  3N2W A;  1VRA A;  3NFB A;  2YEP A;  1B65 A;  3TM2 A;  3NDV A;  3IT4 A;  4IHE A;  3S3U A;  1VZ8 A;  3AXG A; 
#chains in the Genus database with same CATH topology
 2VZK A;  4IHD A;  2DRH A;  2V4I A;  1VZ7 A;  3N33 A;  3TM1 A;  1VZ6 A;  3N5I A;  3IT6 A;  3N2W A;  1VRA A;  3NFB A;  2YEP A;  1B65 A;  3TM2 A;  3NDV A;  3IT4 A;  4IHE A;  3S3U A;  1VZ8 A;  3AXG A; 
#chains in the Genus database with same CATH homology
 2VZK A;  4IHD A;  2DRH A;  2V4I A;  1VZ7 A;  3N33 A;  3TM1 A;  1VZ6 A;  3N5I A;  3IT6 A;  3N2W A;  1VRA A;  3NFB A;  2YEP A;  1B65 A;  3TM2 A;  3NDV A;  3IT4 A;  4IHE A;  3S3U A;  1VZ8 A;  3AXG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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