3QN0 | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	117
structure length	117
Chain Sequence	STTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 117 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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117 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural basis of a novel activity of bacterial 6-pyruvoyltetrahydropterin synthase homologues distinct from mammalian 6-pyruvoyltetrahydropterin synthase activity. pubmed doi rcsb
molecule keywords	6-carboxy-5,6,7,8-tetrahydropterin synthase
molecule tags	Lyase
source organism	Escherichia coli
total genus	28
structure length	117
sequence length	117
chains with identical sequence	B, C, D, E, F
ec nomenclature	ec 4.1.2.50: 6-carboxytetrahydropterin synthase.
pdb deposition date	2011-02-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01242	PTPS	6-pyruvoyl tetrahydropterin synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.479.10	Alpha Beta	2-Layer Sandwich	Tetrahydropterin Synthase; Chain A	Tetrahydropterin Synthase; Chain A	3qn0A00

3QN0A 3LZEA 2DJ6A 2OBAA 3M0NA 2G64A 2A0SA 2DTTA 1Y13A 1B6ZA 1GTQA 3D7JA 1B66A 4NTMA 3JYGA 3I2BA 3QNAA 3QN9A 3LX3A 4NTKA 4NTNA
chains in the Genus database with same CATH superfamily

3QN0A 1WINA 3LZEA 4FVJA 2DJ6A 1TFEA 1AIPC 2OBAA 3BK6A 2G64A 3M0NA 2A0SA 2DTTA 1Y13A 2RPBA 1B6ZA 1GTQA 3D7JA 1B66A 4NTMA 4FVGA 3JYGA 3I2BA 4Q7JA 4FVFA 3QNAA 3QN9A 3LX3A 4NTKA 4NTNA 1EFUB 1XB2B
chains in the Genus database with same CATH topology

3QN0A 1WINA 3LZEA 4FVJA 2DJ6A 2OBAA 3M0NA 3BK6A 2G64A 2A0SA 2DTTA 1Y13A 2RPBA 1B6ZA 1GTQA 3D7JA 1B66A 4NTMA 4FVGA 3JYGA 3I2BA 4FVFA 3QNAA 3QN9A 3LX3A 4NTKA 4NTNA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3QN0 A;  3LZE A;  2DJ6 A;  2OBA A;  3M0N A;  2G64 A;  2A0S A;  2DTT A;  1Y13 A;  1B6Z A;  1GTQ A;  3D7J A;  1B66 A;  4NTM A;  3JYG A;  3I2B A;  3QNA A;  3QN9 A;  3LX3 A;  4NTK A;  4NTN A; 
#chains in the Genus database with same CATH topology
 3QN0 A;  1WIN A;  3LZE A;  4FVJ A;  2DJ6 A;  1TFE A;  1AIP C;  2OBA A;  3BK6 A;  2G64 A;  3M0N A;  2A0S A;  2DTT A;  1Y13 A;  2RPB A;  1B6Z A;  1GTQ A;  3D7J A;  1B66 A;  4NTM A;  4FVG A;  3JYG A;  3I2B A;  4Q7J A;  4FVF A;  3QNA A;  3QN9 A;  3LX3 A;  4NTK A;  4NTN A;  1EFU B;  1XB2 B; 
#chains in the Genus database with same CATH homology
 3QN0 A;  1WIN A;  3LZE A;  4FVJ A;  2DJ6 A;  2OBA A;  3M0N A;  3BK6 A;  2G64 A;  2A0S A;  2DTT A;  1Y13 A;  2RPB A;  1B6Z A;  1GTQ A;  3D7J A;  1B66 A;  4NTM A;  4FVG A;  3JYG A;  3I2B A;  4FVF A;  3QNA A;  3QN9 A;  3LX3 A;  4NTK A;  4NTN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3QN0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations