3TM1 | Genus

Total Genus 115

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	115
sequence length	374
structure length	367
Chain Sequence	GIGGVPGPHNGLTDVPGVRVGHAGRTGDGWLTGVTVVLAPPGGAVAAVDVRGGGPGTRETDALDPRNLVQTIDAVVLTGGSAFGLDAAGGVAAWLEEQGRGFPVGADPSQVVPVVPAAALFDLGRGGTWRARPDAALGRAAVEAAAARPEGDPVEQGGVGAGTGAVVGGLKGGIGTASVVLDSGATVAALAAVNAAGSAVDPATGVLYGARTGLPGEFAGYGVPDAIGADTHARARARLAEAAEETARRRATTLAVVATDATLTRAQAQKLAGTAHDGLARAVRPVHLLSDGDTVFALSTGRRPLLPDRPDATAARAFGVHLEAGALNEVLAAGADVLTRAVVHAVLAATGVDTPGGVHPSYRELYA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 367 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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367 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Autoproteolytic Activation of ThnT Results in Structural Reorganization Necessary for Substrate Binding and Catalysis. pubmed doi rcsb
molecule keywords	cysteine transferase
molecule tags	Hydrolase
source organism	Streptomyces cattleya
total genus	115
structure length	367
sequence length	374
chains with identical sequence	B
ec nomenclature
pdb deposition date	2011-08-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03576	Peptidase_S58	Peptidase family S58

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.70.12	Alpha Beta	4-Layer Sandwich	L-amino peptidase D-ALA esterase/amidase	L-amino peptidase D-ALA esterase/amidase	3tm1A00

2VZKA 1VZ6A 1VZ7A 2YEPA 1VRAA 3N33A 3N2WA 4IHDA 3TM1A 4IHEA 3S3UA 3N5IA 3AXGA 3TM2A 2DRHA 2V4IA 3NDVA 3IT6A 3IT4A 3NFBA 1VZ8A 1B65A
chains in the Genus database with same CATH superfamily

2VZKA 1VZ6A 1VZ7A 2YEPA 1VRAA 3N33A 3N2WA 4IHDA 3TM1A 4IHEA 3S3UA 3N5IA 3AXGA 3TM2A 2DRHA 2V4IA 3NDVA 3IT6A 3IT4A 3NFBA 1VZ8A 1B65A
chains in the Genus database with same CATH topology

2VZKA 1VZ6A 1VZ7A 2YEPA 1VRAA 3N33A 3N2WA 4IHDA 3TM1A 4IHEA 3S3UA 3N5IA 3AXGA 3TM2A 2DRHA 2V4IA 3NDVA 3IT6A 3IT4A 3NFBA 1VZ8A 1B65A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2VZK A;  1VZ6 A;  1VZ7 A;  2YEP A;  1VRA A;  3N33 A;  3N2W A;  4IHD A;  3TM1 A;  4IHE A;  3S3U A;  3N5I A;  3AXG A;  3TM2 A;  2DRH A;  2V4I A;  3NDV A;  3IT6 A;  3IT4 A;  3NFB A;  1VZ8 A;  1B65 A; 
#chains in the Genus database with same CATH topology
 2VZK A;  1VZ6 A;  1VZ7 A;  2YEP A;  1VRA A;  3N33 A;  3N2W A;  4IHD A;  3TM1 A;  4IHE A;  3S3U A;  3N5I A;  3AXG A;  3TM2 A;  2DRH A;  2V4I A;  3NDV A;  3IT6 A;  3IT4 A;  3NFB A;  1VZ8 A;  1B65 A; 
#chains in the Genus database with same CATH homology
 2VZK A;  1VZ6 A;  1VZ7 A;  2YEP A;  1VRA A;  3N33 A;  3N2W A;  4IHD A;  3TM1 A;  4IHE A;  3S3U A;  3N5I A;  3AXG A;  3TM2 A;  2DRH A;  2V4I A;  3NDV A;  3IT6 A;  3IT4 A;  3NFB A;  1VZ8 A;  1B65 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3TM1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations