3S86 | Genus

Total Genus 63

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	63
sequence length	189
structure length	189
Chain Sequence	KLTVYLATTNPHKVEEIKMIAPEWMEILPSPEKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGEIPHLKEKISHRSKAFRKLFSVLEKIL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Thermotoga maritima
publication title	Structural and functional characterization of a noncanonical nucleoside triphosphate pyrophosphatase from Thermotoga maritima. pubmed doi rcsb
molecule keywords	Nucleoside-triphosphatase
total genus	63
structure length	189
sequence length	189
chains with identical sequence	B, C, D
ec nomenclature	ec 3.6.1.66: XTP/dITP diphosphatase.
pdb deposition date	2011-05-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01725	Ham1p_like	Ham1 family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.950.10	Alpha Beta	Alpha-Beta Complex	Maf protein	Maf protein	3s86A00

1VP2A 1B78A 1EX2A 2E5XA 4JHCA 1U14A 2PYUA 3S86A 2ZTIA 2MJPA 1U5WA 2DVOA 2AMHA 4OO0A 4P0EA 3TQUA 2P5XA 2DVPA 2CARA 4F95A 4HEBA 4BNQA 1K7KA 4P0UA 1ZWYA 1EXCA 2Q16A 1ZNOA 4LU1A 2I5DA 2J4EA 1V7RA 2DVNA
chains in the Genus database with same CATH superfamily

1VP2A 1B78A 4CTAA 1EX2A 2E5XA 4JHCA 1U14A 2PYUA 3S86A 2ZTIA 2MJPA 2DVOA 1U5WA 2AMHA 4OO0A 4P0EA 3TQUA 2P5XA 2DVPA 2CARA 4F95A 4HEBA 4BNQA 1K7KA 4CT9A 4P0UA 2A9SA 4UUWA 1ZWYA 1EXCA 4CT8A 4CTAB 5KOLA 2Q16A 5KVKA 4UOCA 1ZNOA 4LU1A 2I5DA 2J4EA 1V7RA 2DVNA 4UUXA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1VP2 A;  1B78 A;  1EX2 A;  2E5X A;  4JHC A;  1U14 A;  2PYU A;  3S86 A;  2ZTI A;  2MJP A;  1U5W A;  2DVO A;  2AMH A;  4OO0 A;  4P0E A;  3TQU A;  2P5X A;  2DVP A;  2CAR A;  4F95 A;  4HEB A;  4BNQ A;  1K7K A;  4P0U A;  1ZWY A;  1EXC A;  2Q16 A;  1ZNO A;  4LU1 A;  2I5D A;  2J4E A;  1V7R A;  2DVN A; 
#chains in the Genus database with same CATH topology
 1VP2 A;  1B78 A;  4CTA A;  1EX2 A;  2E5X A;  4JHC A;  1U14 A;  2PYU A;  3S86 A;  2ZTI A;  2MJP A;  2DVO A;  1U5W A;  2AMH A;  4OO0 A;  4P0E A;  3TQU A;  2P5X A;  2DVP A;  2CAR A;  4F95 A;  4HEB A;  4BNQ A;  1K7K A;  4CT9 A;  4P0U A;  2A9S A;  4UUW A;  1ZWY A;  1EXC A;  4CT8 A;  4CTA B;  5KOL A;  2Q16 A;  5KVK A;  4UOC A;  1ZNO A;  4LU1 A;  2I5D A;  2J4E A;  1V7R A;  2DVN A;  4UUX A; 
#chains in the Genus database with same CATH homology
 1VP2 A;  1B78 A;  1EX2 A;  2E5X A;  4JHC A;  1U14 A;  2PYU A;  3S86 A;  2ZTI A;  2MJP A;  1U5W A;  2DVO A;  2AMH A;  4OO0 A;  4P0E A;  3TQU A;  2P5X A;  2DVP A;  2CAR A;  4F95 A;  4HEB A;  4BNQ A;  1K7K A;  4P0U A;  1ZWY A;  1EXC A;  2Q16 A;  1ZNO A;  4LU1 A;  2I5D A;  2J4E A;  1V7R A;  2DVN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3S86A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations