4FVJ | Genus

Total Genus 29

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	113
structure length	113
Chain Sequence	DSLIKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	A stomatin dimer modulates the activity of acid-sensing ion channels. pubmed doi rcsb
molecule keywords	Stomatin
molecule tags	Membrane protein
source organism	Mus musculus
total genus	29
structure length	113
sequence length	113
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature
pdb deposition date	2012-06-29

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.479.30	Alpha Beta	2-Layer Sandwich	Tetrahydropterin Synthase; Chain A	Tetrahydropterin Synthase; Chain A	4fvjA00

4FVJA 3BK6A 4FVGA 4FVFA 1WINA 2RPBA
chains in the Genus database with same CATH superfamily

4FVJA 2A0SA 4FVGA 4NTNA 1B66A 2DTTA 4FVFA 1WINA 1EFUB 1XB2B 3M0NA 3QN0A 3JYGA 4NTMA 2OBAA 1GTQA 1AIPC 3BK6A 1Y13A 1TFEA 3LZEA 2RPBA 4NTKA 1B6ZA 2G64A 3QN9A 3LX3A 2DJ6A 4Q7JA 3QNAA 3D7JA 3I2BA
chains in the Genus database with same CATH topology

4FVJA 2A0SA 4FVGA 4NTNA 1B66A 2DTTA 4FVFA 1WINA 3M0NA 3QN0A 3JYGA 4NTMA 2OBAA 1GTQA 3BK6A 1Y13A 3LZEA 2RPBA 4NTKA 1B6ZA 2G64A 3QN9A 3LX3A 2DJ6A 3QNAA 3D7JA 3I2BA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4FVJ A;  3BK6 A;  4FVG A;  4FVF A;  1WIN A;  2RPB A; 
#chains in the Genus database with same CATH topology
 4FVJ A;  2A0S A;  4FVG A;  4NTN A;  1B66 A;  2DTT A;  4FVF A;  1WIN A;  1EFU B;  1XB2 B;  3M0N A;  3QN0 A;  3JYG A;  4NTM A;  2OBA A;  1GTQ A;  1AIP C;  3BK6 A;  1Y13 A;  1TFE A;  3LZE A;  2RPB A;  4NTK A;  1B6Z A;  2G64 A;  3QN9 A;  3LX3 A;  2DJ6 A;  4Q7J A;  3QNA A;  3D7J A;  3I2B A; 
#chains in the Genus database with same CATH homology
 4FVJ A;  2A0S A;  4FVG A;  4NTN A;  1B66 A;  2DTT A;  4FVF A;  1WIN A;  3M0N A;  3QN0 A;  3JYG A;  4NTM A;  2OBA A;  1GTQ A;  3BK6 A;  1Y13 A;  3LZE A;  2RPB A;  4NTK A;  1B6Z A;  2G64 A;  3QN9 A;  3LX3 A;  2DJ6 A;  3QNA A;  3D7J A;  3I2B A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4FVJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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