The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
125
|
sequence length |
386
|
structure length |
386
|
Chain Sequence |
TLLLNINTKAKRISVSDQSTIDILRNGYFGEYRAGKLMLEVEEGLYLVDVRKAACTDENSKPVSFNDIAGVFIKRKKLMARYFTFKDWRDRGLIIKSPGLRFGEEEHVQAKRYPSSAINLKKYSVTGIFFPDDMVTVIDDDESGKDLYENFWLGQYGTYKVSEHGNLNKLDIYETLFLIDMGVISIKNFTRAQIVNIASARRTDIMKLYDVYKDWRTKGYVVKTGFKFGTNFRIYFPGAKPIKENNEWIHSKHVLHVFPRDSKLIISEWARAIRVAHSVRKTFILAIPGKTRKKKLAIDFELYHRRGGDIEIPGKNSPRFGMLSLSENERIGGSELSAIINEAKSRKLELVIAIADSETSVTYYKVRRVDLPKSEYEYYEIDWMQP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity
pubmed doi rcsb |
| molecule keywords |
tRNA intron endonuclease
|
| molecule tags |
Hydrolase
|
| source organism |
Candidatus micrarchaeum acidiphilum
|
| total genus |
125
|
| structure length |
386
|
| sequence length |
386
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.1.27.9: Transferred entry: 4.6.1.16. |
| pdb deposition date | 2012-07-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01974 | tRNA_int_endo | tRNA intron endonuclease, catalytic C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | tRNA intron endonuclease, N-terminal domain |
#chains in the Genus database with same CATH superfamily 4FZ2 A; 1RLV A; 1R0V A; 3IEY A; 3P1Y A; 1R11 A; 3P1Z B; 3AJV B; 2CV8 A; 3P1Z A; 3AJV A; 2GJW A; 2ZYZ B; 1A79 A; #chains in the Genus database with same CATH topology 2WTU A; 1WBD A; 2O8C B; 1EWQ A; 2O8B B; 2O8D A; 1R11 A; 1NG9 A; 3THX A; 3AJV A; 3THY A; 2GJW A; 3K0S A; 1A79 A; 1FW6 A; 1E3M A; 2O8E B; 2FZ4 A; 2O8F A; 3P1Z B; 2CV8 A; 1OH8 A; 3THW A; 3THX B; 1NNE A; 4FZ2 A; 2O8D B; 1WBB A; 1OH7 A; 2O8C A; 2O8B A; 3AJV B; 3ZLJ A; 3THY B; 2ZYZ B; 1W7A A; 1OH5 A; 1RLV A; 2O8E A; 1R0V A; 3P1Y A; 2O8F B; 3THW B; 1OH6 A; 1WB9 A; 3P1Z A; 2FWR A; 3IEY A; #chains in the Genus database with same CATH homology 4FZ2 A; 1RLV A; 1R0V A; 3IEY A; 3P1Y A; 1R11 A; 3P1Z B; 3AJV B; 2CV8 A; 3P1Z A; 3AJV A; 2GJW A; 2ZYZ B; 1A79 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
