2ZYZB

Pyrobaculum aerophilum splicing endonuclease
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
183
structure length
183
Chain Sequence
MIGYLRGLAVIVEDVEFARRLYKEGFYGRFLGYDKVKRDEVEKINAPLILGLYEALYLAEKGRLKVMGEDGREVAPEELAALGRERMRNFDEIYKIYKYFRDLGYVVKSGLKFGALFSVYEKGPGIDHAPMVVVFLEPDKGISATDITRGGRLSHSVRKTWTLATVLRQTGEVVLLGFGWARL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Splicing
molecule keywords Putative uncharacterized protein PAE0789
publication title Functional importance of crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease
pubmed doi rcsb
source organism Pyrobaculum aerophilum
total genus 47
structure length 183
sequence length 183
chains with identical sequence D
ec nomenclature ec 4.6.1.16: tRNA-intron lyase.
pdb deposition date 2009-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01974 tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain
B PF02778 tRNA_int_endo_N tRNA intron endonuclease, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1170.20 Alpha Beta 3-Layer(aba) Sandwich MutS, DNA mismatch repair protein, domain I tRNA intron endonuclease, N-terminal domain 2zyzB01
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2zyzB02
1HH1A 4QBNA 3IEYA 2WCZA 5FDKA 1GEFA 1RZNA 2GW6A 3P1ZB 1R11A 3AJVA 1IPIA 1A79A 4TKKA 1OB9A 3AJVB 4TKDA 4QBLA 2OKFA 2WCWA 1XMXA 1Y1OA 3DNXA 1RLVA 2ZYZA 2CV8A 4FZ2A 2VLDA 2FCOA 2WJ0A 1T0FA 2ZYZB 1ZP7A 3P1YA 2INBA 3FOVA 4QBOA 1F1ZA 1OB8A 2WIZA 2EO0A 1R0VA 1Y88A 2GJWA 3P1ZA 2WIWA 2OSTA
chains in the Genus database with same CATH superfamily
2WCZA 5FDKA 2O8FA 2GW6A 1OH8A 3P1ZB 3AJVA 3BT7A 1IPIA 2O8DA 3THXB 1XMXA 2FL3A 3DNXA 1RLVA 2CV8A 2O8BA 2WJ0A 2FCOA 4E6ZA 1E3MA 2O8CB 3P1YA 3ZLJA 2INBA 1OH7A 2JJQA 2FKCA 1OB8A 3THWB 2FKHB 3K0SA 4ZQUA 1GEFA 2Z0RA 1R11A 3IEYB 1WBBA 1WB9A 1A79A 4TKDA 4QBLA 2OKFA 2WCWA 1Y1OA 2O8CA 1T0FA 2ZYZB 4DAVA 3THWA 2BH2A 4QBOA 1F1ZA 1OH5A 2GJWA 3P1ZA 2FWRA 4DA2A 4EV1A 1RZNA 4G6UA 3THXA 1W7AA 2O8FB 1EWQA 4TKKA 1OB9A 3AJVB 3THYB 2O8EB 2VS1A 4FZ2A 2VLDA 2FZ4A 4DAPA 3IF0X 1ZP7A 3FOVA 2O8BB 1WBDA 2FLCA 1FW6A 4LQEA 2W8MA 1R0VA 1NNEA 2WIWA 1HH1A 4QBNA 3IEYA 3THYA 4G6VA 2O8EA 1UWVA 1OH6A 2IXSA 1NG9A 2O8DB 2ZYZA 2WTUA 2DBSA 2WIZA 2EO0A 2CZRA 1Y88A 1YNMA 2OSTA
chains in the Genus database with same CATH topology
1HH1A 4QBNA 3IEYA 2WCZA 5FDKA 1GEFA 1RZNA 2GW6A 3P1ZB 1R11A 2Z0RA 4G6UA 3AJVA 3BT7A 4G6VA 1IPIA 3IEYB 1UWVA 1A79A 4TKKA 1OB9A 3AJVB 4TKDA 4QBLA 2OKFA 2WCWA 1XMXA 2IXSA 2FL3A 1Y1OA 2VS1A 3DNXA 1RLVA 2ZYZA 2CV8A 4FZ2A 2VLDA 2FCOA 4DAPA 4E6ZA 3IF0X 2WJ0A 1T0FA 2ZYZB 1ZP7A 4DAVA 3P1YA 2INBA 3FOVA 2JJQA 2BH2A 2FKCA 4EV1A 2FKHB 4QBOA 2FLCA 1F1ZA 2DBSA 1OB8A 4LQEA 2WIZA 2W8MA 2EO0A 1R0VA 1Y88A 2CZRA 2GJWA 3P1ZA 4DA2A 1YNMA 2OSTA 4ZQUA 2WIWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HH1 A;  4QBN A;  3IEY A;  2WCZ A;  5FDK A;  1GEF A;  1RZN A;  2GW6 A;  3P1Z B;  1R11 A;  3AJV A;  1IPI A;  1A79 A;  4TKK A;  1OB9 A;  3AJV B;  4TKD A;  4QBL A;  2OKF A;  2WCW A;  1XMX A;  1Y1O A;  3DNX A;  1RLV A;  2ZYZ A;  2CV8 A;  4FZ2 A;  2VLD A;  2FCO A;  2WJ0 A;  1T0F A;  2ZYZ B;  1ZP7 A;  3P1Y A;  2INB A;  3FOV A;  4QBO A;  1F1Z A;  1OB8 A;  2WIZ A;  2EO0 A;  1R0V A;  1Y88 A;  2GJW A;  3P1Z A;  2WIW A;  2OST A; 
#chains in the Genus database with same CATH topology
 2WCZ A;  5FDK A;  2O8F A;  2GW6 A;  1OH8 A;  3P1Z B;  3AJV A;  3BT7 A;  1IPI A;  2O8D A;  3THX B;  1XMX A;  2FL3 A;  3DNX A;  1RLV A;  2CV8 A;  2O8B A;  2WJ0 A;  2FCO A;  4E6Z A;  1E3M A;  2O8C B;  3P1Y A;  3ZLJ A;  2INB A;  1OH7 A;  2JJQ A;  2FKC A;  1OB8 A;  3THW B;  2FKH B;  3K0S A;  4ZQU A;  1GEF A;  2Z0R A;  1R11 A;  3IEY B;  1WBB A;  1WB9 A;  1A79 A;  4TKD A;  4QBL A;  2OKF A;  2WCW A;  1Y1O A;  2O8C A;  1T0F A;  2ZYZ B;  4DAV A;  3THW A;  2BH2 A;  4QBO A;  1F1Z A;  1OH5 A;  2GJW A;  3P1Z A;  2FWR A;  4DA2 A;  4EV1 A;  1RZN A;  4G6U A;  3THX A;  1W7A A;  2O8F B;  1EWQ A;  4TKK A;  1OB9 A;  3AJV B;  3THY B;  2O8E B;  2VS1 A;  4FZ2 A;  2VLD A;  2FZ4 A;  4DAP A;  3IF0 X;  1ZP7 A;  3FOV A;  2O8B B;  1WBD A;  2FLC A;  1FW6 A;  4LQE A;  2W8M A;  1R0V A;  1NNE A;  2WIW A;  1HH1 A;  4QBN A;  3IEY A;  3THY A;  4G6V A;  2O8E A;  1UWV A;  1OH6 A;  2IXS A;  1NG9 A;  2O8D B;  2ZYZ A;  2WTU A;  2DBS A;  2WIZ A;  2EO0 A;  2CZR A;  1Y88 A;  1YNM A;  2OST A; 
#chains in the Genus database with same CATH homology
 1HH1 A;  4QBN A;  3IEY A;  2WCZ A;  5FDK A;  1GEF A;  1RZN A;  2GW6 A;  3P1Z B;  1R11 A;  2Z0R A;  4G6U A;  3AJV A;  3BT7 A;  4G6V A;  1IPI A;  3IEY B;  1UWV A;  1A79 A;  4TKK A;  1OB9 A;  3AJV B;  4TKD A;  4QBL A;  2OKF A;  2WCW A;  1XMX A;  2IXS A;  2FL3 A;  1Y1O A;  2VS1 A;  3DNX A;  1RLV A;  2ZYZ A;  2CV8 A;  4FZ2 A;  2VLD A;  2FCO A;  4DAP A;  4E6Z A;  3IF0 X;  2WJ0 A;  1T0F A;  2ZYZ B;  1ZP7 A;  4DAV A;  3P1Y A;  2INB A;  3FOV A;  2JJQ A;  2BH2 A;  2FKC A;  4EV1 A;  2FKH B;  4QBO A;  2FLC A;  1F1Z A;  2DBS A;  1OB8 A;  4LQE A;  2WIZ A;  2W8M A;  2EO0 A;  1R0V A;  1Y88 A;  2CZR A;  2GJW A;  3P1Z A;  4DA2 A;  1YNM A;  2OST A;  4ZQU A;  2WIW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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