4IO9K

Crystal structure of compound 4d bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
113
structure length
113
Chain Sequence
HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
total genus 37
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 4io9K00
4IOCK 4IOAK 3PIOK 2ZJQK 3DLLK 2CQMA 5GADO 4U67K 3PIPK 4WFBK 5DM7K 5JVGK 5GAHO 4IO9K 5GAGO 5GAEO 4WFAK 5HL7K 5DM6K 5H1SP 5MLCP 4WF9K 4WFNK 2ZJRK 4WCEK 3CF5K 3J7ZN 5JVHK 2ZJPK 1GD8A 4UY8N
chains in the Genus database with same CATH superfamily
4IOCK 4IOAK 3PIOK 2ZJQK 3DLLK 2CQMA 5GADO 4U67K 3PIPK 4WFBK 5DM7K 5JVGK 5GAHO 4IO9K 5GAGO 5GAEO 4WFAK 5HL7K 5DM6K 5H1SP 5MLCP 4WF9K 4WFNK 2ZJRK 4WCEK 3CF5K 3J7ZN 5JVHK 2ZJPK 1GD8A 4UY8N
chains in the Genus database with same CATH topology
4IOCK 4IOAK 3PIOK 2ZJQK 3DLLK 2CQMA 5GADO 4U67K 3PIPK 4WFBK 5DM7K 5JVGK 5GAHO 4IO9K 5GAGO 5GAEO 4WFAK 5HL7K 5DM6K 5H1SP 5MLCP 4WF9K 4WFNK 2ZJRK 4WCEK 3CF5K 3J7ZN 5JVHK 2ZJPK 1GD8A 4UY8N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IOC K;  4IOA K;  3PIO K;  2ZJQ K;  3DLL K;  2CQM A;  5GAD O;  4U67 K;  3PIP K;  4WFB K;  5DM7 K;  5JVG K;  5GAH O;  4IO9 K;  5GAG O;  5GAE O;  4WFA K;  5HL7 K;  5DM6 K;  5H1S P;  5MLC P;  4WF9 K;  4WFN K;  2ZJR K;  4WCE K;  3CF5 K;  3J7Z N;  5JVH K;  2ZJP K;  1GD8 A;  4UY8 N; 
#chains in the Genus database with same CATH topology
 4IOC K;  4IOA K;  3PIO K;  2ZJQ K;  3DLL K;  2CQM A;  5GAD O;  4U67 K;  3PIP K;  4WFB K;  5DM7 K;  5JVG K;  5GAH O;  4IO9 K;  5GAG O;  5GAE O;  4WFA K;  5HL7 K;  5DM6 K;  5H1S P;  5MLC P;  4WF9 K;  4WFN K;  2ZJR K;  4WCE K;  3CF5 K;  3J7Z N;  5JVH K;  2ZJP K;  1GD8 A;  4UY8 N; 
#chains in the Genus database with same CATH homology
 4IOC K;  4IOA K;  3PIO K;  2ZJQ K;  3DLL K;  2CQM A;  5GAD O;  4U67 K;  3PIP K;  4WFB K;  5DM7 K;  5JVG K;  5GAH O;  4IO9 K;  5GAG O;  5GAE O;  4WFA K;  5HL7 K;  5DM6 K;  5H1S P;  5MLC P;  4WF9 K;  4WFN K;  2ZJR K;  4WCE K;  3CF5 K;  3J7Z N;  5JVH K;  2ZJP K;  1GD8 A;  4UY8 N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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