4KA8A

Structure of organellar oligopeptidase
Total Genus 269
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
269
sequence length
695
structure length
695
Chain Sequence
SDETLSSNPLLQDFDFPPFDSVDASHVRPGIRALLQHLEAELEELEKSVEPTWPKLVEPLEKIVDRLTVVWGMINHLKAVKDTPELRAAIEDVQPEKVKFQLRLGQSKPIYNAFKAIRESPDWSSLSEARQRLVEAQIKEAVLIGIALDDEKREEFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPPSALGLFAQAAVSKGHENATAENGPWIITLDAPSYLPVMQHAKNRALREEVYRAYLSRASSGDLDNTAIIDQILKLRLEKAKLLGYNNYAEVSMAMKMATVEKAAELLEKLRSASWDAAVQDMEDLKSFAKNQGAAESDSMTHWDTTFWSERLRESKYDINEEELRPYFSLPKVMDGLFSLAKTLFGIDIEPADGLAPVWNNDVRFYRVKDSSGNPIAYFYFDPYSRPSEKRGGAWMDEVVSRSRVMAQKGSSVRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGIRNIEWDAVELPSQFMENWCYHRDTLMSIAKHYETGETLPEEVYKKLLAARTFRAGSFSLRQLKFASVDLELHTKYVPGGPESIYDVDQRVSVKTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDDIKAVKETGQRFRNTILALGGGKAPLKVFVEFRGREPSPEPLLRHNGLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Organellar oligopeptidase (OOP) provides a complementary pathway for targeting peptide degradation in mitochondria and chloroplasts.
pubmed doi rcsb
molecule keywords Oligopeptidase A
molecule tags Hydrolase
source organism Arabidopsis thaliana
total genus 269
structure length 695
sequence length 695
ec nomenclature ec 3.4.24.70: Oligopeptidase A.
pdb deposition date 2013-04-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01432 Peptidase_M3 Peptidase family M3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1370.10 Mainly Alpha Orthogonal Bundle Neurolysin; domain 3 Neurolysin, domain 3 4ka8A02
1.10.1370.40 Mainly Alpha Orthogonal Bundle Neurolysin; domain 3 Neurolysin; domain 3 4ka8A01
5L44A 2O36A 4PUTA 4FXYP 1I1IP 5L43A 4KA7A 2O3EA 4KA8A 1S4BP 1Y791
chains in the Genus database with same CATH superfamily
5L44A 3HOAA 4PUTA 1KA2A 3HQ2A 2H1NA 3CE2A 3AHNA 3AHOA 1KA4A 2QR4A 4FXYP 1I1IP 3DWCA 2O3EA 1K9XA 3AHMA 1Y791 2O36A 5L43A 5E3XA 2H1JA 3SKSA 4KA8A 1S4BP 4KA7A
chains in the Genus database with same CATH topology
5L44A 3HOAA 4PUTA 1KA2A 3HQ2A 2H1NA 3CE2A 3AHNA 3AHOA 1KA4A 2QR4A 4FXYP 1I1IP 3DWCA 2O3EA 1K9XA 3AHMA 1Y791 2O36A 5L43A 5E3XA 2H1JA 3SKSA 4KA8A 1S4BP 4KA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L44 A;  2O36 A;  4PUT A;  4FXY P;  1I1I P;  5L43 A;  4KA7 A;  2O3E A;  4KA8 A;  1S4B P;  1Y79 1; 
#chains in the Genus database with same CATH topology
 5L44 A;  3HOA A;  4PUT A;  1KA2 A;  3HQ2 A;  2H1N A;  3CE2 A;  3AHN A;  3AHO A;  1KA4 A;  2QR4 A;  4FXY P;  1I1I P;  3DWC A;  2O3E A;  1K9X A;  3AHM A;  1Y79 1;  2O36 A;  5L43 A;  5E3X A;  2H1J A;  3SKS A;  4KA8 A;  1S4B P;  4KA7 A; 
#chains in the Genus database with same CATH homology
 5L44 A;  3HOA A;  4PUT A;  1KA2 A;  3HQ2 A;  2H1N A;  3CE2 A;  3AHN A;  3AHO A;  1KA4 A;  2QR4 A;  4FXY P;  1I1I P;  3DWC A;  2O3E A;  1K9X A;  3AHM A;  1Y79 1;  2O36 A;  5L43 A;  5E3X A;  2H1J A;  3SKS A;  4KA8 A;  1S4B P;  4KA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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