The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
23
|
sequence length |
104
|
structure length |
104
|
Chain Sequence |
RSPRLVGGDIPCSGRVEVQHGDTWGTVCDSDFSLEAASVLCRELQCGTVVSLLGGAHFGEGSGQIWAEEFQCEGHESHLSLCPVAPRPDGTCSHSRDVGVVCST
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Crystal Structure of the Fifth Scavenger Receptor Cysteine-Rich Domain of Porcine CD163 Reveals an Important Residue Involved in Porcine Reproductive and Respiratory Syndrome Virus Infection
pubmed doi rcsb |
| molecule tags |
Endocytosis
|
| source organism |
Sus scrofa
|
| molecule keywords |
Scavenger receptor cysteine-rich type 1 protein M130
|
| total genus |
23
|
| structure length |
104
|
| sequence length |
104
|
| ec nomenclature | |
| pdb deposition date | 2016-04-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00530 | SRCR | Scavenger receptor cysteine-rich domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Mac-2 Binding Protein | SRCR-like domain |
#chains in the Genus database with same CATH superfamily 2OTT X; 2JOP A; 1P57 A; 2JP0 A; 2JA4 A; 2OY3 A; 2XRC A; 2OYA A; 5JFB A; 1BY2 A; 3T2N A; 1O5E L; 1Z8G A; 5CE1 A; 1O5F L; #chains in the Genus database with same CATH topology 2OTT X; 2JOP A; 1P57 A; 2JP0 A; 2JA4 A; 2OY3 A; 2XRC A; 2OYA A; 5JFB A; 1BY2 A; 3T2N A; 1O5E L; 1Z8G A; 5CE1 A; 1O5F L; #chains in the Genus database with same CATH homology 2OTT X; 2JOP A; 1P57 A; 2JP0 A; 2JA4 A; 2OY3 A; 2XRC A; 2OYA A; 5JFB A; 1BY2 A; 3T2N A; 1O5E L; 1Z8G A; 5CE1 A; 1O5F L;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
