3KNUA

Crystal structure of trna (guanine-n1)-methyltransferase from anaplasma phagocytophilum
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
Knots found
sequence length
212
structure length
192
Chain Sequence
SMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFATVDDTPYGGGPGMLLRADVLGRCIDEVLSLHPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPGVIEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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connected with : NaN
publication title Crystal structure of tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum
rcsb
molecule tags Transferase
source organism Anaplasma phagocytophilum
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
total genus 51
structure length 192
sequence length 212
chains with identical sequence B, C, D
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2009-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 3knuA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3knuA01
3BBEA 3OIIA 4MCDA 4IG6A 4J3CA 4X3MA 1IPAA 1NXZA 3OINA 4E8BA 3AXZA 5GMBA 1O6DA 1NS5A 4YQBA 4MCBA 3AIAA 4YQKA 3ILKA 4PZKA 1P9PA 1UALA 4YQTA 2Z0YA 4YVJA 3IEFA 4H3YA 1GZ0A 4YQRA 3BBDA 4YVGA 3IC6A 4YQ0A 1MXIA 4RG1A 4CNEA 3BBHA 4YQQA 4YQ6A 2EGVA 1VHKA 4X3LA 2QMMA 4CNGA 4YQDA 4JAKA 4YQ4A 4YQ2A 2YY8A 3O7BA 3KNUA 4JALA 1UAKA 2V3KA 2QWVA 4KGNA 4YQPA 1VHYA 2HA8A 4YPXA 1UAMA 1TO0A 4MCCA 4YQOA 5CO4A 4CNFA 4YQ5A 1Z85A 4YPZA 5GM8A 1X7OA 4YVIA 3ONPA 3AI9X 4YVKA 4L69A 4YQCA 4XBOA 4YQSA 1ZJRA 1OY5A 4YQAA 3OIJA 4FAKA 4YQ9A 3NK7A 1UAJA 1V2XA 1X7PA 3N4KA 3DCMX 4KDZA 3QUVA 4YQIA 3KTYA 1VH0A 1K3RA 1J85A 4YQJA 3KW2A 5GMCA 4YQ8A 4CNDA 5D9FA 4YVHA 4YPWA 1V6ZA 3N4JA 2CX8A 2EGWA 4YQ7A 4YPYA 4YQ1A 5FAIA 2I6DA 3GYQA 2V3JA 3E5YA 4YQNA 4YQ3A 3NK6A 4H3ZA 4YQLA 4YQGA 3KY7A 3L8UA 2O3AA
chains in the Genus database with same CATH superfamily
3BBEA 3OIIA 4MCDA 4IG6A 4JWHA 4J3CA 4JWJA 4X3MA 1IPAA 1NXZA 3OINA 4E8BA 3AXZA 5GMBA 1WRSR 1O6DA 1NS5A 4YQBA 4MCBA 3AIAA 1JHGA 4YQKA 3ILKA 4PZKA 1P9PA 1UALA 4YQTA 2Z0YA 4YVJA 3IEFA 4H3YA 1GZ0A 4YQRA 3BBDA 4YVGA 3IC6A 1RCSA 4YQ0A 1MXIA 4RG1A 4FMWA 4CNEA 3BBHA 1MI7R 4YQQA 4YQ6A 2EGVA 1VHKA 4X3LA 2QMMA 4CNGA 4YQDA 4JAKA 4YQ4A 4YQ2A 2YY8A 1CO0A 3O7BA 3KNUA 4JALA 1UAKA 3SSXN 2V3KA 2QWVA 4KGNA 3SSWN 1TRRA 4YQPA 1VHYA 2HA8A 1ZT9A 4JWFA 4YPXA 1UAMA 1TO0A 3KORA 4MCCA 4YQOA 3WRPA 5CO4A 4CNFA 4YQ5A 1Z85A 4YPZA 3FRWA 5GM8A 1X7OA 3G1CA 4YVIA 3ONPA 3AI9X 4YVKA 4L69A 4YQCA 4XBOA 4YQSA 1ZJRA 1OY5A 4YQAA 3OIJA 1WRTR 4FAKA 4YQ9A 3NK7A 1UAJA 1V2XA 1X7PA 3N4KA 3DCMX 4KDZA 3QUVA 4YQIA 3KTYA 1VH0A 1K3RA 1J85A 4YQJA 3KW2A 5GMCA 4YQ8A 4CNDA 2XDIA 5D9FA 2OZ9R 4YVHA 4YPWA 1V6ZA 3N4JA 2CX8A 1WRPR 2EGWA 4YQ7A 4YPYA 4YQ1A 5FAIA 2I6DA 3GYQA 2V3JA 3E5YA 4YQNA 4YQ3A 3NK6A 4H3ZA 1TROA 4YQLA 4JWGA 4YQGA 3KY7A 3L8UA 2O3AA
chains in the Genus database with same CATH topology
3BBEA 3OIIA 4MCDA 4IG6A 4JWHA 4J3CA 4JWJA 4X3MA 1IPAA 1NXZA 3OINA 4E8BA 3AXZA 5GMBA 1O6DA 1NS5A 4YQBA 4MCBA 3AIAA 4YQKA 3ILKA 4PZKA 1P9PA 1UALA 4YQTA 2Z0YA 4YVJA 3IEFA 4H3YA 1GZ0A 4YQRA 3BBDA 4YVGA 3IC6A 4YQ0A 1MXIA 4RG1A 4FMWA 4CNEA 3BBHA 4YQQA 4YQ6A 2EGVA 1VHKA 4X3LA 2QMMA 4CNGA 4YQDA 4JAKA 4YQ4A 4YQ2A 2YY8A 3O7BA 3KNUA 4JALA 1UAKA 2V3KA 2QWVA 4KGNA 4YQPA 1VHYA 2HA8A 4JWFA 4YPXA 1UAMA 1TO0A 4MCCA 4YQOA 5CO4A 4CNFA 4YQ5A 1Z85A 4YPZA 5GM8A 1X7OA 4YVIA 3ONPA 3AI9X 4YVKA 4L69A 4YQCA 4XBOA 4YQSA 1ZJRA 1OY5A 4YQAA 3OIJA 4FAKA 4YQ9A 3NK7A 1UAJA 1V2XA 1X7PA 3N4KA 3DCMX 4KDZA 3QUVA 4YQIA 3KTYA 1VH0A 1K3RA 1J85A 4YQJA 3KW2A 5GMCA 4YQ8A 4CNDA 5D9FA 4YVHA 4YPWA 1V6ZA 3N4JA 2CX8A 2EGWA 4YQ7A 4YPYA 4YQ1A 5FAIA 2I6DA 3GYQA 2V3JA 3E5YA 4YQNA 4YQ3A 3NK6A 4H3ZA 4YQLA 4JWGA 4YQGA 3KY7A 3L8UA 2O3AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBE A;  3OII A;  4MCD A;  4IG6 A;  4J3C A;  4X3M A;  1IPA A;  1NXZ A;  3OIN A;  4E8B A;  3AXZ A;  5GMB A;  1O6D A;  1NS5 A;  4YQB A;  4MCB A;  3AIA A;  4YQK A;  3ILK A;  4PZK A;  1P9P A;  1UAL A;  4YQT A;  2Z0Y A;  4YVJ A;  3IEF A;  4H3Y A;  1GZ0 A;  4YQR A;  3BBD A;  4YVG A;  3IC6 A;  4YQ0 A;  1MXI A;  4RG1 A;  4CNE A;  3BBH A;  4YQQ A;  4YQ6 A;  2EGV A;  1VHK A;  4X3L A;  2QMM A;  4CNG A;  4YQD A;  4JAK A;  4YQ4 A;  4YQ2 A;  2YY8 A;  3O7B A;  3KNU A;  4JAL A;  1UAK A;  2V3K A;  2QWV A;  4KGN A;  4YQP A;  1VHY A;  2HA8 A;  4YPX A;  1UAM A;  1TO0 A;  4MCC A;  4YQO A;  5CO4 A;  4CNF A;  4YQ5 A;  1Z85 A;  4YPZ A;  5GM8 A;  1X7O A;  4YVI A;  3ONP A;  3AI9 X;  4YVK A;  4L69 A;  4YQC A;  4XBO A;  4YQS A;  1ZJR A;  1OY5 A;  4YQA A;  3OIJ A;  4FAK A;  4YQ9 A;  3NK7 A;  1UAJ A;  1V2X A;  1X7P A;  3N4K A;  3DCM X;  4KDZ A;  3QUV A;  4YQI A;  3KTY A;  1VH0 A;  1K3R A;  1J85 A;  4YQJ A;  3KW2 A;  5GMC A;  4YQ8 A;  4CND A;  5D9F A;  4YVH A;  4YPW A;  1V6Z A;  3N4J A;  2CX8 A;  2EGW A;  4YQ7 A;  4YPY A;  4YQ1 A;  5FAI A;  2I6D A;  3GYQ A;  2V3J A;  3E5Y A;  4YQN A;  4YQ3 A;  3NK6 A;  4H3Z A;  4YQL A;  4YQG A;  3KY7 A;  3L8U A;  2O3A A; 
#chains in the Genus database with same CATH topology
 3BBE A;  3OII A;  4MCD A;  4IG6 A;  4JWH A;  4J3C A;  4JWJ A;  4X3M A;  1IPA A;  1NXZ A;  3OIN A;  4E8B A;  3AXZ A;  5GMB A;  1WRS R;  1O6D A;  1NS5 A;  4YQB A;  4MCB A;  3AIA A;  1JHG A;  4YQK A;  3ILK A;  4PZK A;  1P9P A;  1UAL A;  4YQT A;  2Z0Y A;  4YVJ A;  3IEF A;  4H3Y A;  1GZ0 A;  4YQR A;  3BBD A;  4YVG A;  3IC6 A;  1RCS A;  4YQ0 A;  1MXI A;  4RG1 A;  4FMW A;  4CNE A;  3BBH A;  1MI7 R;  4YQQ A;  4YQ6 A;  2EGV A;  1VHK A;  4X3L A;  2QMM A;  4CNG A;  4YQD A;  4JAK A;  4YQ4 A;  4YQ2 A;  2YY8 A;  1CO0 A;  3O7B A;  3KNU A;  4JAL A;  1UAK A;  3SSX N;  2V3K A;  2QWV A;  4KGN A;  3SSW N;  1TRR A;  4YQP A;  1VHY A;  2HA8 A;  1ZT9 A;  4JWF A;  4YPX A;  1UAM A;  1TO0 A;  3KOR A;  4MCC A;  4YQO A;  3WRP A;  5CO4 A;  4CNF A;  4YQ5 A;  1Z85 A;  4YPZ A;  3FRW A;  5GM8 A;  1X7O A;  3G1C A;  4YVI A;  3ONP A;  3AI9 X;  4YVK A;  4L69 A;  4YQC A;  4XBO A;  4YQS A;  1ZJR A;  1OY5 A;  4YQA A;  3OIJ A;  1WRT R;  4FAK A;  4YQ9 A;  3NK7 A;  1UAJ A;  1V2X A;  1X7P A;  3N4K A;  3DCM X;  4KDZ A;  3QUV A;  4YQI A;  3KTY A;  1VH0 A;  1K3R A;  1J85 A;  4YQJ A;  3KW2 A;  5GMC A;  4YQ8 A;  4CND A;  2XDI A;  5D9F A;  2OZ9 R;  4YVH A;  4YPW A;  1V6Z A;  3N4J A;  2CX8 A;  1WRP R;  2EGW A;  4YQ7 A;  4YPY A;  4YQ1 A;  5FAI A;  2I6D A;  3GYQ A;  2V3J A;  3E5Y A;  4YQN A;  4YQ3 A;  3NK6 A;  4H3Z A;  1TRO A;  4YQL A;  4JWG A;  4YQG A;  3KY7 A;  3L8U A;  2O3A A; 
#chains in the Genus database with same CATH homology
 3BBE A;  3OII A;  4MCD A;  4IG6 A;  4JWH A;  4J3C A;  4JWJ A;  4X3M A;  1IPA A;  1NXZ A;  3OIN A;  4E8B A;  3AXZ A;  5GMB A;  1O6D A;  1NS5 A;  4YQB A;  4MCB A;  3AIA A;  4YQK A;  3ILK A;  4PZK A;  1P9P A;  1UAL A;  4YQT A;  2Z0Y A;  4YVJ A;  3IEF A;  4H3Y A;  1GZ0 A;  4YQR A;  3BBD A;  4YVG A;  3IC6 A;  4YQ0 A;  1MXI A;  4RG1 A;  4FMW A;  4CNE A;  3BBH A;  4YQQ A;  4YQ6 A;  2EGV A;  1VHK A;  4X3L A;  2QMM A;  4CNG A;  4YQD A;  4JAK A;  4YQ4 A;  4YQ2 A;  2YY8 A;  3O7B A;  3KNU A;  4JAL A;  1UAK A;  2V3K A;  2QWV A;  4KGN A;  4YQP A;  1VHY A;  2HA8 A;  4JWF A;  4YPX A;  1UAM A;  1TO0 A;  4MCC A;  4YQO A;  5CO4 A;  4CNF A;  4YQ5 A;  1Z85 A;  4YPZ A;  5GM8 A;  1X7O A;  4YVI A;  3ONP A;  3AI9 X;  4YVK A;  4L69 A;  4YQC A;  4XBO A;  4YQS A;  1ZJR A;  1OY5 A;  4YQA A;  3OIJ A;  4FAK A;  4YQ9 A;  3NK7 A;  1UAJ A;  1V2X A;  1X7P A;  3N4K A;  3DCM X;  4KDZ A;  3QUV A;  4YQI A;  3KTY A;  1VH0 A;  1K3R A;  1J85 A;  4YQJ A;  3KW2 A;  5GMC A;  4YQ8 A;  4CND A;  5D9F A;  4YVH A;  4YPW A;  1V6Z A;  3N4J A;  2CX8 A;  2EGW A;  4YQ7 A;  4YPY A;  4YQ1 A;  5FAI A;  2I6D A;  3GYQ A;  2V3J A;  3E5Y A;  4YQN A;  4YQ3 A;  3NK6 A;  4H3Z A;  4YQL A;  4JWG A;  4YQG A;  3KY7 A;  3L8U A;  2O3A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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