1DTD | Genus

Total Genus 10

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	10
sequence length	61
structure length	61
Chain Sequence	DESFLCYQPDQVCCFICRGAAPLPSEGECNPHPTAPWCREGAVEWVPYSTGQCRTTCIPYV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/hydrolase inhibitor
publication title	Structure of a novel leech carboxypeptidase inhibitor determined free in solution and in complex with human carboxypeptidase A2. pubmed doi rcsb
molecule keywords	CARBOXYPEPTIDASE A2
total genus	10
structure length	61
sequence length	61
ec nomenclature
pdb deposition date	2000-01-12

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1040.10	Alpha Beta	2-Layer Sandwich	Carboxypeptidase Inhibitor; Chain A	Carboxypeptidase inhibitor	1dtdB00

1DTVA 2ABZC 1ZFIA 1DTDB 1ZFLA
chains in the Genus database with same CATH superfamily

3PJVD 2ABZC 1DTDB 1ZFLA 3HVNA 3G2PA 3CQFA 1PFOA 3G2OA 1M3IA 4HSCX 1S3RA 1M3JA 3G2QA 1DTVA 4BIKA 3IF8B 1ZFIA 3G2MA
chains in the Genus database with same CATH topology

1DTVA 2ABZC 1ZFIA 1DTDB 1ZFLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1DTV A;  2ABZ C;  1ZFI A;  1DTD B;  1ZFL A; 
#chains in the Genus database with same CATH topology
 3PJV D;  2ABZ C;  1DTD B;  1ZFL A;  3HVN A;  3G2P A;  3CQF A;  1PFO A;  3G2O A;  1M3I A;  4HSC X;  1S3R A;  1M3J A;  3G2Q A;  1DTV A;  4BIK A;  3IF8 B;  1ZFI A;  3G2M A; 
#chains in the Genus database with same CATH homology
 1DTV A;  2ABZ C;  1ZFI A;  1DTD B;  1ZFL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1DTDB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN