The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
104
|
sequence length |
467
|
structure length |
462
|
Chain Sequence |
b'KNASDINTGIANLKYDSRDILAVNGDKVESFIPKESINSNGKFVVVEREKKSLTTSPVDILIIDSVVNRTYPGAVQLANKAFADNQPSLLVAKRKPLNISIDLPGMRKENTITVQNPTYGNVAGAVDDLVSTWNEKYSTTHTLPARMQYTESMVYSKSQIASALNVNAKYLDNSLNIDFNAVANGEKKVMVAAYKQIFYTVSAELPNNPSDLFDNSVTFDELTRKGVSNSAPPVMVSNVAYGRTVYVKLETTSKSKDVQAAFKALLKNNSVETSGQYKDIFEESTFTAVVLGGDKVVTKDFNEIRNIIKDNAELSFKNPAYPISYTSTFLKDNATAAVHNNTDYIETTTTEYSSAKMTLDHYGAYVAQFDVSWDEFTFDQNGKEVLTHKTWEGSGKDKTAHYSTVIPLPPNSKNIKIVARECTGLAWEWWRTIINEQNVPLTNEIKVSIGGTTLYPTATISH'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Cellular Functions and X-ray Structure of Anthrolysin O, a Cholesterol-dependent Cytolysin Secreted by Bacillus anthracis
pubmed doi rcsb |
| molecule keywords |
Thiol-activated cytolysin
|
| source organism |
Bacillus anthracis
|
| molecule tags |
Toxin
|
| total genus |
104
|
| structure length |
462
|
| sequence length |
467
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2008-04-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01289 | Thiol_cytolysin | Thiol-activated cytolysin |
| A | PF17440 | Thiol_cytolys_C | Thiol-activated cytolysin beta sandwich domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Immunoglobulin-like | Perfringolysin, domain 4 | ||
| Alpha Beta | 2-Layer Sandwich | Carboxypeptidase Inhibitor; Chain A | Carboxypeptidase Inhibitor; Chain A | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Perfringolysin | ||
| Alpha Beta | Alpha-Beta Complex | HIV-1 Reverse Transcriptase; Chain A, domain 3 | Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain |
