The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
129
|
sequence length |
434
|
structure length |
434
|
Chain Sequence |
PPEFGMKEMRESWKVHVAPEDRPTQQENDWDLENLFSVTLRDAGQIALIDGATYEIKSVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLDNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFNVYNTMTDTY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Proton-Coupled Structural Changes Upon Binding of Carbon Monoxide to Cytochrome Cd(1): A Combined Flash Photolysis and X-Ray Crystallography Study
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
NITRITE REDUCTASE
|
| total genus |
129
|
| structure length |
434
|
| sequence length |
434
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
1.7.2.1: Nitrite reductase (NO-forming). |
| pdb deposition date | 2000-01-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02239 | Cytochrom_D1 | Cytochrome D1 heme domain |
| A | PF13442 | Cytochrome_CBB3 | Cytochrome C oxidase, cbb3-type, subunit III |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 8 Propeller | Methanol Dehydrogenase; Chain A | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |
#chains in the Genus database with same CATH superfamily 1AOM A; 1N15 A; 1N50 A; 1NIR A; 1QKS A; 1HJ4 A; 1N90 A; 1H9X A; 1HCM A; 1H9Y A; 1DY7 A; 1AOF A; 1AOQ A; 1GJQ A; 1HJ5 A; 1NNO A; 1GQ1 A; 1HJ3 A; 1HZU A; 1HZV A; 1BL9 A; 1E2R A; #chains in the Genus database with same CATH topology 2BUC A; 3SX4 A; 2OQI A; 3VJK A; 2FJP A; 1QKS A; 4KR0 A; 3Q0T A; 3HAB A; 2G5T A; 2GBF A; 2I3Z A; 3EIO A; 5ISM A; 1R9N A; 2DCM A; 1H9Y A; 1DY7 A; 3VJL A; 1PFQ A; 1GJQ A; 2AJD A; 4L72 A; 1W1I A; 2BGN A; 2AJB A; 1HZU A; 4JH0 A; 2RGU A; 4DSZ A; 1N15 A; 4WJL A; 4MAE A; 3CCB A; 4FFV A; 2P8S A; 4PV7 A; 1U8E A; 2AD6 A; 2Z3W A; 1N90 A; 2BUA A; 4CVB A; 5I7U A; 2AJC A; 3D4L A; 5J3J A; 1G72 A; 3CCC A; 1KV9 A; 3OPM A; 1NU8 A; 2ECF A; 2OAE A; 1AOQ A; 2G5P A; 1H4I A; 2GBC A; 3O95 A; 1YIQ A; 1NNO A; 2G63 A; 3H0C A; 2AJ8 A; 1GQ1 A; 1ORW A; 1FLG A; 4PNZ A; 1RWQ A; 3KWJ A; 4FFW A; 1WCY A; 2QOE A; 4N8D A; 5T4F A; 2QJR A; 3G0B A; 1H4J A; 1R9M A; 1TK3 A; 2AD8 A; 2JID A; 1N50 A; 4DSA A; 4QZV A; 2OGZ A; 1NIR A; 3G0C A; 3KWF A; 2I03 A; 3HAC A; 1HJ4 A; 4LKO A; 2OPH A; 1ORV A; 3BJM A; 1H9X A; 4MH1 A; 2AD7 A; 1NU6 A; 3OC0 A; 2OQV A; 2OLE A; 4DTC A; 3O9V A; 2BUB A; 2D5L A; 2RIP A; 3G0D A; 4G1F A; 2IIT A; 4TQO A; 1TKR A; 5KBY A; 1J2E A; 1HJ3 A; 2QTB A; 1HZV A; 1KB0 A; 2OAG A; 1AOM A; 3QBJ A; 2ONC A; 1W6S A; 3WQH A; 2AJL I; 3C45 A; 2GBG A; 1N1M A; 3VJM A; 2D0V A; 1HCM A; 3C43 A; 2QT9 A; 5T4E A; 4Q1V A; 2GBI A; 5T4H A; 1AOF A; 3SWW A; 2IIV A; 2BGR A; 1LRW A; 4A5S A; 1XFD A; 1HJ5 A; 5LLS A; 2QKY A; 3Q8W A; 1X70 A; 1Z68 A; 4N8E A; 4CVC A; 3G0G A; 3NOX A; 2HHA A; 2Z3Z A; 1BL9 A; 3F8S A; 3W2T A; 2I78 A; 2EEP A; 4J3J A; 4AAH A; 1E2R A; 5T4B A; #chains in the Genus database with same CATH homology 1AOM A; 1N15 A; 1N50 A; 1NIR A; 1QKS A; 1HJ4 A; 1N90 A; 1H9X A; 1HCM A; 1H9Y A; 1DY7 A; 1AOF A; 1AOQ A; 1GJQ A; 1HJ5 A; 1NNO A; 1GQ1 A; 1HJ3 A; 1HZU A; 1HZV A; 1BL9 A; 1E2R A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
