4CVBA

Crystal structure of quinone-dependent alcohol dehydrogenase from pseudogluconobacter saccharoketogenenes
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
562
structure length
562
Chain Sequence
SAIENFQPVTADDLAGKNPANWPILRGNYQGWGYSPLDQINKDNVGDLQLVWSRTMEPGSNEGAAIAYNGVIFLGNTNDVIQAIDGKTGSLIWEYRRKLPSASKFINSLGAAKRSIALFGDKVYFVSWDNFVVALDAKTGKLAWETNRGQGVEEGVANSSGPIVVDGVVIAGSTCQFSGFGCYVTGTDAESGEELWRNTFIPRPGEEGDDTWGGAPYENRWMTGAWGQITYDPELDLVYYGSTGAGPASEVQRGTEGGTLAGTNTRFAVKPKTGEVVWKHQTLPRDNWDSECTFEMMVVSTSVNPDAKADGMMSVGANVPRGETRKVLTGVPCKTGVAWQFDAKTGDYFWSKATVEQNSIASIDDTGLVTVNEDMILKEPGKTYNYCPTFLGGRDWPSAGYLPKSNLYVIPLSNACYDVMARTTEATPADVYNTDATLVLAPGKTNMGRVDAIDLATGETKWSYETRAALYDPVLTTGGDLVFVGGIDRDFRALDAESGKEVWSTRLPGAVSGYTTSYSIDGRQYVAVVSGGSLGGPTFGPTTPDVDSASGANGIYVFALPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords ALCOHOL DEHYDROGENASE
publication title Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase from Pseudogluconobacter Saccharoketogenes. A Versatile Dehydrogenase Oxidizing Alcohols and Carbohydrates.
pubmed doi rcsb
source organism Pseudogluconobacter saccharoketogenes
total genus 176
structure length 562
sequence length 562
ec nomenclature ec 1.1.2.8: Alcohol dehydrogenase (cytochrome c).
pdb deposition date 2014-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13360 PQQ_2 PQQ-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 4cvbA00
1W6SA 1YIQA 2D0VA 4MAEA 1H4JA 1H4IA 2AD6A 1LRWA 2AD7A 2AD8A 1FLGA 4AAHA 4CVBA 4MH1A 4TQOA 1KB0A 4CVCA 1G72A 1KV9A
chains in the Genus database with same CATH superfamily
3Q0TA 1TKRA 2G5TA 4N8EA 1W6SA 1X70A 2I78A 4KR0A 2JIDA 2BGRA 2I03A 5J3JA 3G0DA 2AJCA 2ONCA 1GQ1A 3VJMA 1HJ4A 1H4IA 1H9YA 3EIOA 3VJKA 3W2TA 1R9NA 1HJ3A 2OQVA 1PFQA 2OLEA 1AOFA 3SWWA 4CVBA 4TQOA 3CCCA 1DY7A 2IITA 4FFVA 2GBCA 4CVCA 5T4HA 4DSAA 1R9MA 2Z3ZA 2AJ8A 1AOQA 1N15A 2QTBA 3C43A 3D4LA 3CCBA 5T4BA 5I7UA 3OPMA 4DSZA 1YIQA 2AJBA 4LKOA 3KWFA 4JH0A 2QKYA 5T4EA 4MAEA 2G5PA 3SX4A 4WJLA 3KWJA 1NU8A 1XFDA 1W1IA 4PV7A 1HZUA 1KB0A 4QZVA 1TK3A 3VJLA 2D5LA 2OPHA 1U8EA 1KV9A 2DCMA 2BGNA 3O95A 2BUAA 3G0BA 3HACA 1N90A 3HABA 4PNZA 1N50A 5LLSA 2IIVA 5T4FA 2GBGA 2ECFA 1Z68A 1HCMA 4J3JA 3Q8WA 4Q1VA 1HZVA 3BJMA 1BL9A 1ORWA 3G0CA 1E2RA 5ISMA 1H4JA 2I3ZA 3H0CA 1H9XA 1NIRA 1NU6A 2AD6A 1LRWA 2AD7A 1FLGA 2AD8A 4AAHA 1GJQA 1HJ5A 2BUCA 4DTCA 1NNOA 3G0GA 2OAGA 3C45A 4L72A 4N8DA 2EEPA 1N1MA 4FFWA 3WQHA 2RIPA 3F8SA 2OQIA 2D0VA 3O9VA 3QBJA 2AJLI 2QT9A 1WCYA 2RGUA 2AJDA 2QOEA 2G63A 2GBIA 2Z3WA 3OC0A 4G1FA 2BUBA 1AOMA 3NOXA 2HHAA 2OAEA 4MH1A 2GBFA 2OGZA 1J2EA 1RWQA 1QKSA 5KBYA 2FJPA 1ORVA 2P8SA 1G72A 4A5SA 2QJRA
chains in the Genus database with same CATH topology
1W6SA 1YIQA 2D0VA 4MAEA 1H4JA 1H4IA 2AD6A 1LRWA 2AD7A 2AD8A 1FLGA 4AAHA 4CVBA 4MH1A 4TQOA 1KB0A 4CVCA 1G72A 1KV9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W6S A;  1YIQ A;  2D0V A;  4MAE A;  1H4J A;  1H4I A;  2AD6 A;  1LRW A;  2AD7 A;  2AD8 A;  1FLG A;  4AAH A;  4CVB A;  4MH1 A;  4TQO A;  1KB0 A;  4CVC A;  1G72 A;  1KV9 A; 
#chains in the Genus database with same CATH topology
 3Q0T A;  1TKR A;  2G5T A;  4N8E A;  1W6S A;  1X70 A;  2I78 A;  4KR0 A;  2JID A;  2BGR A;  2I03 A;  5J3J A;  3G0D A;  2AJC A;  2ONC A;  1GQ1 A;  3VJM A;  1HJ4 A;  1H4I A;  1H9Y A;  3EIO A;  3VJK A;  3W2T A;  1R9N A;  1HJ3 A;  2OQV A;  1PFQ A;  2OLE A;  1AOF A;  3SWW A;  4CVB A;  4TQO A;  3CCC A;  1DY7 A;  2IIT A;  4FFV A;  2GBC A;  4CVC A;  5T4H A;  4DSA A;  1R9M A;  2Z3Z A;  2AJ8 A;  1AOQ A;  1N15 A;  2QTB A;  3C43 A;  3D4L A;  3CCB A;  5T4B A;  5I7U A;  3OPM A;  4DSZ A;  1YIQ A;  2AJB A;  4LKO A;  3KWF A;  4JH0 A;  2QKY A;  5T4E A;  4MAE A;  2G5P A;  3SX4 A;  4WJL A;  3KWJ A;  1NU8 A;  1XFD A;  1W1I A;  4PV7 A;  1HZU A;  1KB0 A;  4QZV A;  1TK3 A;  3VJL A;  2D5L A;  2OPH A;  1U8E A;  1KV9 A;  2DCM A;  2BGN A;  3O95 A;  2BUA A;  3G0B A;  3HAC A;  1N90 A;  3HAB A;  4PNZ A;  1N50 A;  5LLS A;  2IIV A;  5T4F A;  2GBG A;  2ECF A;  1Z68 A;  1HCM A;  4J3J A;  3Q8W A;  4Q1V A;  1HZV A;  3BJM A;  1BL9 A;  1ORW A;  3G0C A;  1E2R A;  5ISM A;  1H4J A;  2I3Z A;  3H0C A;  1H9X A;  1NIR A;  1NU6 A;  2AD6 A;  1LRW A;  2AD7 A;  1FLG A;  2AD8 A;  4AAH A;  1GJQ A;  1HJ5 A;  2BUC A;  4DTC A;  1NNO A;  3G0G A;  2OAG A;  3C45 A;  4L72 A;  4N8D A;  2EEP A;  1N1M A;  4FFW A;  3WQH A;  2RIP A;  3F8S A;  2OQI A;  2D0V A;  3O9V A;  3QBJ A;  2AJL I;  2QT9 A;  1WCY A;  2RGU A;  2AJD A;  2QOE A;  2G63 A;  2GBI A;  2Z3W A;  3OC0 A;  4G1F A;  2BUB A;  1AOM A;  3NOX A;  2HHA A;  2OAE A;  4MH1 A;  2GBF A;  2OGZ A;  1J2E A;  1RWQ A;  1QKS A;  5KBY A;  2FJP A;  1ORV A;  2P8S A;  1G72 A;  4A5S A;  2QJR A; 
#chains in the Genus database with same CATH homology
 1W6S A;  1YIQ A;  2D0V A;  4MAE A;  1H4J A;  1H4I A;  2AD6 A;  1LRW A;  2AD7 A;  2AD8 A;  1FLG A;  4AAH A;  4CVB A;  4MH1 A;  4TQO A;  1KB0 A;  4CVC A;  1G72 A;  1KV9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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