1H4IA

Methylobacterium extorquens methanol dehydrogenase
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
595
structure length
595
Chain Sequence
NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dehydrogenase
molecule keywords METHANOL DEHYDROGENASE SUBUNIT 1
publication title The Refined Structure of the Quinoprotein Methanol Dehydrogenase from Methylobacterium Extorquens at 1.94 A.
pubmed doi rcsb
total genus 183
structure length 595
sequence length 595
chains with identical sequence C
ec nomenclature ec 1.1.2.7: Methanol dehydrogenase (cytochrome c).
pdb deposition date 2001-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01011 PQQ PQQ enzyme repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 1h4iA00
1KB0A 1YIQA 4MH1A 4TQOA 4MAEA 4AAHA 1H4JA 2AD7A 2AD8A 1FLGA 4CVCA 1H4IA 4CVBA 1KV9A 1LRWA 2AD6A 1W6SA 2D0VA 1G72A
chains in the Genus database with same CATH superfamily
4DSZA 1PFQA 1TKRA 1BL9A 3G0DA 5ISMA 1HJ4A 3CCBA 2HHAA 3CCCA 1ORWA 1GJQA 2BUCA 2Z3ZA 3G0CA 5LLSA 4TQOA 3Q8WA 2QOEA 1HJ5A 2OPHA 3D4LA 2GBFA 1NU6A 1HCMA 2ECFA 1E2RA 2OQIA 3SWWA 2BGNA 1DY7A 1FLGA 2BUAA 2GBIA 2P8SA 1J2EA 4CVBA 1WCYA 2AJDA 3WQHA 5T4EA 4N8DA 2OLEA 3F8SA 2IITA 4QZVA 3EIOA 3OPMA 4A5SA 1KB0A 3Q0TA 4J3JA 3KWFA 2FJPA 4MH1A 4DSAA 1HZVA 2JIDA 2OAEA 5T4FA 3C45A 5J3JA 2I78A 1NNOA 4G1FA 2BGRA 2OGZA 3W2TA 1AOFA 2QKYA 1N90A 2AD7A 2GBCA 3G0GA 1NIRA 2Z3WA 4CVCA 3VJLA 4N8EA 1R9MA 2I3ZA 3QBJA 1KV9A 1LRWA 1Z68A 1QKSA 2ONCA 4FFVA 3SX4A 1H9YA 1RWQA 3HABA 4L72A 4PV7A 5T4BA 1N1MA 1ORVA 1HZUA 1YIQA 3HACA 2I03A 2G63A 3NOXA 2RGUA 2RIPA 3G0BA 2BUBA 3H0CA 1GQ1A 3BJMA 4AAHA 4DTCA 3O9VA 2AD8A 5I7UA 1W1IA 1AOQA 1AOMA 2GBGA 4Q1VA 3KWJA 3OC0A 2QT9A 1NU8A 4JH0A 2AD6A 1W6SA 2G5TA 4FFWA 2D0VA 2QTBA 2AJ8A 2DCMA 2AJBA 2OQVA 1H9XA 2QJRA 1HJ3A 1N50A 3O95A 2D5LA 5T4HA 2AJCA 4PNZA 2AJLI 4MAEA 3C43A 1TK3A 2IIVA 1N15A 4WJLA 1R9NA 4KR0A 1H4JA 1H4IA 2G5PA 3VJKA 4LKOA 2EEPA 2OAGA 1X70A 1XFDA 3VJMA 1G72A 1U8EA 5KBYA
chains in the Genus database with same CATH topology
1KB0A 1YIQA 4MH1A 4TQOA 4MAEA 4AAHA 1H4JA 2AD7A 2AD8A 1FLGA 4CVCA 1H4IA 4CVBA 1KV9A 1LRWA 2AD6A 1W6SA 2D0VA 1G72A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KB0 A;  1YIQ A;  4MH1 A;  4TQO A;  4MAE A;  4AAH A;  1H4J A;  2AD7 A;  2AD8 A;  1FLG A;  4CVC A;  1H4I A;  4CVB A;  1KV9 A;  1LRW A;  2AD6 A;  1W6S A;  2D0V A;  1G72 A; 
#chains in the Genus database with same CATH topology
 4DSZ A;  1PFQ A;  1TKR A;  1BL9 A;  3G0D A;  5ISM A;  1HJ4 A;  3CCB A;  2HHA A;  3CCC A;  1ORW A;  1GJQ A;  2BUC A;  2Z3Z A;  3G0C A;  5LLS A;  4TQO A;  3Q8W A;  2QOE A;  1HJ5 A;  2OPH A;  3D4L A;  2GBF A;  1NU6 A;  1HCM A;  2ECF A;  1E2R A;  2OQI A;  3SWW A;  2BGN A;  1DY7 A;  1FLG A;  2BUA A;  2GBI A;  2P8S A;  1J2E A;  4CVB A;  1WCY A;  2AJD A;  3WQH A;  5T4E A;  4N8D A;  2OLE A;  3F8S A;  2IIT A;  4QZV A;  3EIO A;  3OPM A;  4A5S A;  1KB0 A;  3Q0T A;  4J3J A;  3KWF A;  2FJP A;  4MH1 A;  4DSA A;  1HZV A;  2JID A;  2OAE A;  5T4F A;  3C45 A;  5J3J A;  2I78 A;  1NNO A;  4G1F A;  2BGR A;  2OGZ A;  3W2T A;  1AOF A;  2QKY A;  1N90 A;  2AD7 A;  2GBC A;  3G0G A;  1NIR A;  2Z3W A;  4CVC A;  3VJL A;  4N8E A;  1R9M A;  2I3Z A;  3QBJ A;  1KV9 A;  1LRW A;  1Z68 A;  1QKS A;  2ONC A;  4FFV A;  3SX4 A;  1H9Y A;  1RWQ A;  3HAB A;  4L72 A;  4PV7 A;  5T4B A;  1N1M A;  1ORV A;  1HZU A;  1YIQ A;  3HAC A;  2I03 A;  2G63 A;  3NOX A;  2RGU A;  2RIP A;  3G0B A;  2BUB A;  3H0C A;  1GQ1 A;  3BJM A;  4AAH A;  4DTC A;  3O9V A;  2AD8 A;  5I7U A;  1W1I A;  1AOQ A;  1AOM A;  2GBG A;  4Q1V A;  3KWJ A;  3OC0 A;  2QT9 A;  1NU8 A;  4JH0 A;  2AD6 A;  1W6S A;  2G5T A;  4FFW A;  2D0V A;  2QTB A;  2AJ8 A;  2DCM A;  2AJB A;  2OQV A;  1H9X A;  2QJR A;  1HJ3 A;  1N50 A;  3O95 A;  2D5L A;  5T4H A;  2AJC A;  4PNZ A;  2AJL I;  4MAE A;  3C43 A;  1TK3 A;  2IIV A;  1N15 A;  4WJL A;  1R9N A;  4KR0 A;  1H4J A;  1H4I A;  2G5P A;  3VJK A;  4LKO A;  2EEP A;  2OAG A;  1X70 A;  1XFD A;  3VJM A;  1G72 A;  1U8E A;  5KBY A; 
#chains in the Genus database with same CATH homology
 1KB0 A;  1YIQ A;  4MH1 A;  4TQO A;  4MAE A;  4AAH A;  1H4J A;  2AD7 A;  2AD8 A;  1FLG A;  4CVC A;  1H4I A;  4CVB A;  1KV9 A;  1LRW A;  2AD6 A;  1W6S A;  2D0V A;  1G72 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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