1G72A

Catalytic mechanism of quinoprotein methanol dehydrogenase: a theoretical and x-ray crystallographic investigation
Total Genus 177
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
177
sequence length
571
structure length
571
Chain Sequence
DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFRELQNHTQMGGGLMVFSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Catalytic mechanism of quinoprotein methanol dehydrogenase: A theoretical and x-ray crystallographic investigation.
pubmed doi rcsb
molecule keywords METHANOL DEHYDROGENASE HEAVY SUBUNIT
molecule tags Oxidoreductase
total genus 177
structure length 571
sequence length 571
chains with identical sequence C
ec nomenclature ec 1.1.2.7: Methanol dehydrogenase (cytochrome c).
pdb deposition date 2000-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13360 PQQ_2 PQQ-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 1g72A00
4TQOA 1YIQA 1H4IA 2D0VA 4CVCA 2AD7A 2AD6A 1LRWA 1G72A 4AAHA 2AD8A 1KV9A 1H4JA 4MH1A 1W6SA 1KB0A 4MAEA 4CVBA 1FLGA
chains in the Genus database with same CATH superfamily
1WCYA 2IIVA 3C43A 4A5SA 5KBYA 1BL9A 2QTBA 4LKOA 2D0VA 5ISMA 2AJDA 4CVCA 3EIOA 2AD6A 2RIPA 3G0DA 2AJCA 4AAHA 5T4FA 5I7UA 4WJLA 2OLEA 1ORVA 3SX4A 2RGUA 1W6SA 1H9YA 5T4EA 1ORWA 1KB0A 3G0GA 4CVBA 1FLGA 4PV7A 1PFQA 1HZVA 5T4BA 2D5LA 2HHAA 2OAEA 2BUCA 1TKRA 2QKYA 1J2EA 1NU6A 1GJQA 1TK3A 2AD7A 2FJPA 2GBCA 3CCBA 3F8SA 4FFWA 2DCMA 1U8EA 1RWQA 1HZUA 4DTCA 2BUAA 2Z3ZA 2ONCA 2OQIA 3QBJA 1AOQA 2JIDA 3HABA 4FFVA 2EEPA 3HACA 4JH0A 5J3JA 3O95A 2OQVA 2QJRA 2I03A 4QZVA 3G0CA 4KR0A 1E2RA 1R9NA 1NIRA 4MAEA 2AJBA 3CCCA 2I3ZA 2OPHA 1GQ1A 3OPMA 4L72A 4TQOA 1DY7A 2P8SA 4G1FA 4J3JA 3KWJA 4DSAA 1XFDA 2BUBA 3G0BA 1KV9A 3H0CA 4N8EA 1H4JA 1H9XA 2QOEA 1N15A 2GBIA 3NOXA 3Q8WA 3WQHA 1Z68A 5T4HA 2OGZA 2GBFA 2OAGA 1HCMA 1N90A 1AOMA 3O9VA 2I78A 2QT9A 1HJ4A 5LLSA 3W2TA 2BGRA 2G5TA 3SWWA 1W1IA 3VJLA 3OC0A 1NU8A 1YIQA 2AJLI 1H4IA 4DSZA 4N8DA 1HJ5A 1NNOA 3Q0TA 3D4LA 2G5PA 1R9MA 3BJMA 1LRWA 1G72A 1QKSA 2AD8A 2GBGA 3C45A 4Q1VA 1N50A 2AJ8A 2IITA 4PNZA 2Z3WA 4MH1A 1HJ3A 3VJMA 1N1MA 2ECFA 3VJKA 3KWFA 2G63A 1X70A 2BGNA 1AOFA
chains in the Genus database with same CATH topology
4TQOA 1YIQA 1H4IA 2D0VA 4CVCA 2AD7A 2AD6A 1LRWA 1G72A 4AAHA 2AD8A 1KV9A 1H4JA 4MH1A 1W6SA 1KB0A 4MAEA 4CVBA 1FLGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TQO A;  1YIQ A;  1H4I A;  2D0V A;  4CVC A;  2AD7 A;  2AD6 A;  1LRW A;  1G72 A;  4AAH A;  2AD8 A;  1KV9 A;  1H4J A;  4MH1 A;  1W6S A;  1KB0 A;  4MAE A;  4CVB A;  1FLG A; 
#chains in the Genus database with same CATH topology
 1WCY A;  2IIV A;  3C43 A;  4A5S A;  5KBY A;  1BL9 A;  2QTB A;  4LKO A;  2D0V A;  5ISM A;  2AJD A;  4CVC A;  3EIO A;  2AD6 A;  2RIP A;  3G0D A;  2AJC A;  4AAH A;  5T4F A;  5I7U A;  4WJL A;  2OLE A;  1ORV A;  3SX4 A;  2RGU A;  1W6S A;  1H9Y A;  5T4E A;  1ORW A;  1KB0 A;  3G0G A;  4CVB A;  1FLG A;  4PV7 A;  1PFQ A;  1HZV A;  5T4B A;  2D5L A;  2HHA A;  2OAE A;  2BUC A;  1TKR A;  2QKY A;  1J2E A;  1NU6 A;  1GJQ A;  1TK3 A;  2AD7 A;  2FJP A;  2GBC A;  3CCB A;  3F8S A;  4FFW A;  2DCM A;  1U8E A;  1RWQ A;  1HZU A;  4DTC A;  2BUA A;  2Z3Z A;  2ONC A;  2OQI A;  3QBJ A;  1AOQ A;  2JID A;  3HAB A;  4FFV A;  2EEP A;  3HAC A;  4JH0 A;  5J3J A;  3O95 A;  2OQV A;  2QJR A;  2I03 A;  4QZV A;  3G0C A;  4KR0 A;  1E2R A;  1R9N A;  1NIR A;  4MAE A;  2AJB A;  3CCC A;  2I3Z A;  2OPH A;  1GQ1 A;  3OPM A;  4L72 A;  4TQO A;  1DY7 A;  2P8S A;  4G1F A;  4J3J A;  3KWJ A;  4DSA A;  1XFD A;  2BUB A;  3G0B A;  1KV9 A;  3H0C A;  4N8E A;  1H4J A;  1H9X A;  2QOE A;  1N15 A;  2GBI A;  3NOX A;  3Q8W A;  3WQH A;  1Z68 A;  5T4H A;  2OGZ A;  2GBF A;  2OAG A;  1HCM A;  1N90 A;  1AOM A;  3O9V A;  2I78 A;  2QT9 A;  1HJ4 A;  5LLS A;  3W2T A;  2BGR A;  2G5T A;  3SWW A;  1W1I A;  3VJL A;  3OC0 A;  1NU8 A;  1YIQ A;  2AJL I;  1H4I A;  4DSZ A;  4N8D A;  1HJ5 A;  1NNO A;  3Q0T A;  3D4L A;  2G5P A;  1R9M A;  3BJM A;  1LRW A;  1G72 A;  1QKS A;  2AD8 A;  2GBG A;  3C45 A;  4Q1V A;  1N50 A;  2AJ8 A;  2IIT A;  4PNZ A;  2Z3W A;  4MH1 A;  1HJ3 A;  3VJM A;  1N1M A;  2ECF A;  3VJK A;  3KWF A;  2G63 A;  1X70 A;  2BGN A;  1AOF A; 
#chains in the Genus database with same CATH homology
 4TQO A;  1YIQ A;  1H4I A;  2D0V A;  4CVC A;  2AD7 A;  2AD6 A;  1LRW A;  1G72 A;  4AAH A;  2AD8 A;  1KV9 A;  1H4J A;  4MH1 A;  1W6S A;  1KB0 A;  4MAE A;  4CVB A;  1FLG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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