1G72A

Catalytic mechanism of quinoprotein methanol dehydrogenase: a theoretical and x-ray crystallographic investigation
Total Genus 177
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
177
sequence length
571
structure length
571
Chain Sequence
DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFRELQNHTQMGGGLMVFSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Catalytic mechanism of quinoprotein methanol dehydrogenase: A theoretical and x-ray crystallographic investigation.
pubmed doi rcsb
molecule keywords METHANOL DEHYDROGENASE HEAVY SUBUNIT
molecule tags Oxidoreductase
total genus 177
structure length 571
sequence length 571
chains with identical sequence C
ec nomenclature ec 1.1.2.7: Methanol dehydrogenase (cytochrome c).
pdb deposition date 2000-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13360 PQQ_2 PQQ-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 1g72A00
1H4JA 4CVBA 2D0VA 2AD7A 1H4IA 1YIQA 1LRWA 4CVCA 4MH1A 2AD6A 1KB0A 1W6SA 1G72A 4TQOA 4AAHA 1FLGA 2AD8A 1KV9A 4MAEA
chains in the Genus database with same CATH superfamily
4PNZA 3HABA 1N90A 2QJRA 5KBYA 1X70A 2AD7A 2IITA 5T4BA 3Q0TA 1HJ4A 2BGRA 5T4HA 2BUAA 1LRWA 2BGNA 4CVCA 4A5SA 2ONCA 4FFVA 4MH1A 4G1FA 2GBIA 5ISMA 4KR0A 2DCMA 1G72A 1HJ5A 2BUBA 1FLGA 2AJCA 3CCBA 4N8EA 1WCYA 1NU8A 2GBFA 1H9YA 1DY7A 1W1IA 1H4JA 1PFQA 4CVBA 3CCCA 2OAGA 4J3JA 2D0VA 5J3JA 3H0CA 3Q8WA 1H9XA 3EIOA 3SX4A 2OQVA 2Z3ZA 3G0DA 3QBJA 2I78A 2QTBA 1H4IA 1N50A 2BUCA 2OGZA 2JIDA 3SWWA 2I3ZA 4JH0A 2AD6A 1ORWA 3VJMA 1W6SA 3O9VA 1NNOA 2D5LA 2IIVA 4DSZA 1AOQA 1N1MA 5LLSA 2RGUA 3KWFA 2QT9A 1N15A 1GJQA 3HACA 4MAEA 3VJKA 2OPHA 1Z68A 4LKOA 5T4EA 2OQIA 1GQ1A 5T4FA 2GBCA 2GBGA 3F8SA 4QZVA 1TKRA 1XFDA 2AJ8A 2ECFA 1RWQA 4N8DA 2Z3WA 3G0CA 2I03A 1HZVA 1HCMA 1HZUA 2G5TA 2RIPA 3OC0A 4Q1VA 4PV7A 3G0BA 2AJBA 4TQOA 2AJLI 4AAHA 1AOFA 3BJMA 4DSAA 2AD8A 2FJPA 1KV9A 2EEPA 1U8EA 1E2RA 3KWJA 4WJLA 1J2EA 1NU6A 2AJDA 2OLEA 5I7UA 1R9MA 3C43A 3W2TA 1YIQA 3C45A 3O95A 1ORVA 2P8SA 4FFWA 3WQHA 1HJ3A 4L72A 2G63A 1TK3A 1BL9A 3VJLA 2G5PA 3G0GA 1QKSA 1KB0A 3NOXA 4DTCA 3D4LA 1AOMA 3OPMA 1NIRA 2OAEA 2QKYA 1R9NA 2HHAA 2QOEA
chains in the Genus database with same CATH topology
1H4JA 4CVBA 2D0VA 2AD7A 1H4IA 1YIQA 1LRWA 4CVCA 4MH1A 2AD6A 1KB0A 1W6SA 1G72A 4TQOA 4AAHA 1FLGA 2AD8A 1KV9A 4MAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H4J A;  4CVB A;  2D0V A;  2AD7 A;  1H4I A;  1YIQ A;  1LRW A;  4CVC A;  4MH1 A;  2AD6 A;  1KB0 A;  1W6S A;  1G72 A;  4TQO A;  4AAH A;  1FLG A;  2AD8 A;  1KV9 A;  4MAE A; 
#chains in the Genus database with same CATH topology
 4PNZ A;  3HAB A;  1N90 A;  2QJR A;  5KBY A;  1X70 A;  2AD7 A;  2IIT A;  5T4B A;  3Q0T A;  1HJ4 A;  2BGR A;  5T4H A;  2BUA A;  1LRW A;  2BGN A;  4CVC A;  4A5S A;  2ONC A;  4FFV A;  4MH1 A;  4G1F A;  2GBI A;  5ISM A;  4KR0 A;  2DCM A;  1G72 A;  1HJ5 A;  2BUB A;  1FLG A;  2AJC A;  3CCB A;  4N8E A;  1WCY A;  1NU8 A;  2GBF A;  1H9Y A;  1DY7 A;  1W1I A;  1H4J A;  1PFQ A;  4CVB A;  3CCC A;  2OAG A;  4J3J A;  2D0V A;  5J3J A;  3H0C A;  3Q8W A;  1H9X A;  3EIO A;  3SX4 A;  2OQV A;  2Z3Z A;  3G0D A;  3QBJ A;  2I78 A;  2QTB A;  1H4I A;  1N50 A;  2BUC A;  2OGZ A;  2JID A;  3SWW A;  2I3Z A;  4JH0 A;  2AD6 A;  1ORW A;  3VJM A;  1W6S A;  3O9V A;  1NNO A;  2D5L A;  2IIV A;  4DSZ A;  1AOQ A;  1N1M A;  5LLS A;  2RGU A;  3KWF A;  2QT9 A;  1N15 A;  1GJQ A;  3HAC A;  4MAE A;  3VJK A;  2OPH A;  1Z68 A;  4LKO A;  5T4E A;  2OQI A;  1GQ1 A;  5T4F A;  2GBC A;  2GBG A;  3F8S A;  4QZV A;  1TKR A;  1XFD A;  2AJ8 A;  2ECF A;  1RWQ A;  4N8D A;  2Z3W A;  3G0C A;  2I03 A;  1HZV A;  1HCM A;  1HZU A;  2G5T A;  2RIP A;  3OC0 A;  4Q1V A;  4PV7 A;  3G0B A;  2AJB A;  4TQO A;  2AJL I;  4AAH A;  1AOF A;  3BJM A;  4DSA A;  2AD8 A;  2FJP A;  1KV9 A;  2EEP A;  1U8E A;  1E2R A;  3KWJ A;  4WJL A;  1J2E A;  1NU6 A;  2AJD A;  2OLE A;  5I7U A;  1R9M A;  3C43 A;  3W2T A;  1YIQ A;  3C45 A;  3O95 A;  1ORV A;  2P8S A;  4FFW A;  3WQH A;  1HJ3 A;  4L72 A;  2G63 A;  1TK3 A;  1BL9 A;  3VJL A;  2G5P A;  3G0G A;  1QKS A;  1KB0 A;  3NOX A;  4DTC A;  3D4L A;  1AOM A;  3OPM A;  1NIR A;  2OAE A;  2QKY A;  1R9N A;  2HHA A;  2QOE A; 
#chains in the Genus database with same CATH homology
 1H4J A;  4CVB A;  2D0V A;  2AD7 A;  1H4I A;  1YIQ A;  1LRW A;  4CVC A;  4MH1 A;  2AD6 A;  1KB0 A;  1W6S A;  1G72 A;  4TQO A;  4AAH A;  1FLG A;  2AD8 A;  1KV9 A;  4MAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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