The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
168
|
sequence length |
600
|
structure length |
600
|
Chain Sequence |
NDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENVKQLRPAWSFSTGVLHGHEGTPLVVGDRMFIHTPFPNTTFALDLNEPGKILWQNKPKQNPTARTVACCDVVNRGLAYWPGDDQVKPLIFRTQLDGHIVAMDAETGETRWIMENSDIKVGSTLTIAPYVIKDLVLVGSSGAELGVRGYVTAYDVKSGEMRWRAFATGPDEELLLAEDFNAPNPHYGQKNLGLETWEGDAWKIGGGTNWGWYAYDPEVDLFYYGSGNPAPWNETMRPGDNKWTMAIWGREATTGEAKFAYQKTPHDEWDYAGVNVMMLSEQEDKQGQMRKLLTHPDRNGIVYTLDRTNGDLISADKMDDTVNWVKEVQLDTGLPVRDPEFGTRMDHKARDICPSAMGYHNQGHDSYDPERKVFMLGINHICMDWEPFMLPYRAGQFFVGATLTMYPGPKGDRGNASGLGQIKAYDAISGEMKWEKMERFSVWGGTMATAGGLTFYATLDGFIKARDSDTGDLLWKFKLPSGVIGHPMTYKHDGRQYVAIMYGVGGWPGVGLVFDLADPTAGLGSVGAFKRLQEFTQMGGGVMVFSLDGESPYSDPNVGEYAPGEPT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
X-ray structure of methanol dehydrogenase from Paracoccus denitrificans and molecular modeling of its interactions with cytochrome c-551i
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
methanol dehydrogenase subunit 1
|
| total genus |
168
|
| structure length |
600
|
| sequence length |
600
|
| chains with identical sequence |
C
|
| ec nomenclature |
ec
1.1.2.7: Methanol dehydrogenase (cytochrome c). |
| pdb deposition date | 2002-05-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01011 | PQQ | PQQ enzyme repeat |
| A | PF13360 | PQQ_2 | PQQ-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 8 Propeller | Methanol Dehydrogenase; Chain A | Quinoprotein alcohol dehydrogenase-like superfamily |
#chains in the Genus database with same CATH superfamily 4MAE A; 4MH1 A; 1H4I A; 1YIQ A; 4AAH A; 4CVB A; 2AD7 A; 2AD6 A; 4TQO A; 1FLG A; 1W6S A; 1H4J A; 4CVC A; 2D0V A; 1KV9 A; 1KB0 A; 1LRW A; 2AD8 A; 1G72 A; #chains in the Genus database with same CATH topology 1QKS A; 2I78 A; 3O9V A; 2QTB A; 5T4E A; 3SX4 A; 1XFD A; 2OGZ A; 2D5L A; 2GBF A; 2I03 A; 1J2E A; 2GBG A; 2AD7 A; 3HAB A; 4FFW A; 3VJM A; 3G0B A; 3G0D A; 1KV9 A; 3VJL A; 2P8S A; 1LRW A; 2AJ8 A; 2G63 A; 2AD8 A; 1N50 A; 2IIT A; 1NNO A; 4PV7 A; 2OAE A; 1H9X A; 3SWW A; 4MH1 A; 2G5P A; 3OC0 A; 2I3Z A; 2OLE A; 5LLS A; 2BUA A; 1H4I A; 1WCY A; 2AJL I; 2FJP A; 3CCB A; 3G0G A; 3H0C A; 2GBI A; 3WQH A; 3HAC A; 2DCM A; 5I7U A; 1PFQ A; 2BGN A; 1AOF A; 4WJL A; 1ORV A; 3BJM A; 3OPM A; 1NIR A; 1E2R A; 1FLG A; 4JH0 A; 1W6S A; 2GBC A; 3EIO A; 1HCM A; 3C43 A; 1ORW A; 2Z3W A; 2QT9 A; 3CCC A; 3D4L A; 4DSA A; 2ONC A; 1BL9 A; 1N15 A; 2BUB A; 5T4H A; 4L72 A; 1R9N A; 2IIV A; 1R9M A; 3NOX A; 4KR0 A; 3G0C A; 4G1F A; 4MAE A; 1HZU A; 3KWF A; 2AJC A; 1TKR A; 1YIQ A; 4Q1V A; 2G5T A; 2OAG A; 2QKY A; 4AAH A; 4FFV A; 1W1I A; 4DSZ A; 4QZV A; 4DTC A; 4CVB A; 1DY7 A; 5T4F A; 1X70 A; 4PNZ A; 2OQV A; 2AD6 A; 5KBY A; 1HZV A; 1GJQ A; 4A5S A; 4TQO A; 2QJR A; 2QOE A; 1H4J A; 1GQ1 A; 2BGR A; 4LKO A; 1HJ5 A; 1H9Y A; 4N8D A; 3W2T A; 1RWQ A; 1U8E A; 1NU8 A; 3VJK A; 2RGU A; 1NU6 A; 1G72 A; 2RIP A; 4N8E A; 1AOM A; 5ISM A; 1AOQ A; 2ECF A; 3QBJ A; 3O95 A; 5J3J A; 2AJB A; 3C45 A; 2OQI A; 2OPH A; 1N90 A; 2EEP A; 3KWJ A; 1HJ4 A; 3F8S A; 2HHA A; 3Q8W A; 4CVC A; 1N1M A; 2D0V A; 3Q0T A; 4J3J A; 1KB0 A; 2BUC A; 2AJD A; 2JID A; 5T4B A; 1Z68 A; 2Z3Z A; 1HJ3 A; 1TK3 A; #chains in the Genus database with same CATH homology 4MAE A; 4MH1 A; 1H4I A; 1YIQ A; 4AAH A; 4CVB A; 2AD7 A; 2AD6 A; 4TQO A; 1FLG A; 1W6S A; 1H4J A; 4CVC A; 2D0V A; 1KV9 A; 1KB0 A; 1LRW A; 2AD8 A; 1G72 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
