The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
41
|
sequence length |
180
|
structure length |
180
|
Chain Sequence |
LDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Detailed analysis of RNA-protein interactions within the bacterial ribosomal
protein L5/5S rRNA complex
pubmed rcsb |
| molecule keywords |
5S rRNA fragment
|
| molecule tags |
Ribosome
|
| source organism |
Escherichia coli
|
| total genus |
41
|
| structure length |
180
|
| sequence length |
180
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2002-08-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00281 | Ribosomal_L5 | Ribosomal protein L5 |
| A | PF00673 | Ribosomal_L5_C | ribosomal L5P family C-terminus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 50s Ribosomal Protein L5; Chain: A, | 50s Ribosomal Protein L5; Chain: A, |
#chains in the Genus database with same CATH superfamily 2WNY A; 4WFB D; 3CC4 D; 3CCE D; 1KC8 F; 3I56 D; 4WFN D; 2ZJP D; 1K73 F; 5JVH D; 1IQ4 A; 5HL7 D; 4WF9 D; 1Q81 F; 1VQ9 D; 3G4S D; 3I55 D; 1M1K F; 4IOA D; 1QVF D; 5DM6 D; 2QEX D; 1VQL D; 1NJI F; 1VQN D; 3CCU D; 1MJI A; 3DLL D; 2OGK A; 4IOC D; 1YIT D; 3CCR D; 4U67 D; 1W2B D; 1VQO D; 3CPW D; 3CCS D; 1VQ7 D; 5DM7 D; 3CCV D; 1VQK D; 3CC7 D; 1YJW D; 1YIJ D; 1YHQ D; 1Q86 F; 5MLC G; 4WFA D; 5GAE F; 1N8R F; 3CCL D; 3OW2 D; 3G71 D; 1KQS D; 2NWU A; 1VQ6 D; 1K9M F; 3C9G A; 3CXC D; 5GAG F; 3CMA D; 5H1S H; 1QVG D; 4IO9 D; 5GAH F; 3G6E D; 1YJ9 D; 3CME D; 1VQP D; 2OTJ D; 2NRQ A; 1JJ2 D; 3CCJ D; 3CF5 D; 1YJN D; 2OTL D; 1M90 F; 2PZZ A; 2ZJQ D; 3CCM D; 1S72 D; 1VQ5 D; 2QA4 D; 3PIO D; 1Q82 F; 1VQ4 D; 1VQM D; 1K8A F; 3CD6 D; 5GAD F; 2ZJR D; 3CC2 D; 1Q7Y F; 1VQ8 D; 3D7A A; 3PIP D; 3CCQ D; 1YI2 D; 3J7Z F; 5JVG D; 4UY8 F; 1KD1 F; 4WCE D; #chains in the Genus database with same CATH topology 2WNY A; 4WFB D; 3CC4 D; 3CCE D; 1KC8 F; 3I56 D; 4WFN D; 2ZJP D; 1K73 F; 5JVH D; 1IQ4 A; 5HL7 D; 4WF9 D; 1Q81 F; 1VQ9 D; 3G4S D; 3I55 D; 1M1K F; 4IOA D; 1QVF D; 5DM6 D; 2QEX D; 1VQL D; 1NJI F; 1VQN D; 3CCU D; 1MJI A; 3DLL D; 2OGK A; 4IOC D; 1YIT D; 3CCR D; 4U67 D; 1W2B D; 1VQO D; 3CPW D; 3CCS D; 1VQ7 D; 5DM7 D; 3CCV D; 1VQK D; 3CC7 D; 1YJW D; 1YIJ D; 1YHQ D; 1Q86 F; 5MLC G; 4WFA D; 5GAE F; 1N8R F; 3CCL D; 3OW2 D; 3G71 D; 1KQS D; 2NWU A; 1VQ6 D; 1K9M F; 3C9G A; 3CXC D; 5GAG F; 3CMA D; 5H1S H; 1QVG D; 4IO9 D; 5GAH F; 3G6E D; 1YJ9 D; 3CME D; 1VQP D; 2OTJ D; 2NRQ A; 1JJ2 D; 3CCJ D; 3CF5 D; 1YJN D; 2OTL D; 1M90 F; 2PZZ A; 2ZJQ D; 3CCM D; 1S72 D; 1VQ5 D; 2QA4 D; 3PIO D; 1Q82 F; 1VQ4 D; 1VQM D; 1K8A F; 3CD6 D; 5GAD F; 2ZJR D; 3CC2 D; 1Q7Y F; 1VQ8 D; 3D7A A; 3PIP D; 3CCQ D; 1YI2 D; 3J7Z F; 5JVG D; 4UY8 F; 1KD1 F; 4WCE D; #chains in the Genus database with same CATH homology 2WNY A; 4WFB D; 3CC4 D; 3CCE D; 1KC8 F; 3I56 D; 4WFN D; 2ZJP D; 1K73 F; 5JVH D; 1IQ4 A; 5HL7 D; 4WF9 D; 1Q81 F; 1VQ9 D; 3G4S D; 3I55 D; 1M1K F; 4IOA D; 1QVF D; 5DM6 D; 2QEX D; 1VQL D; 1NJI F; 1VQN D; 3CCU D; 1MJI A; 3DLL D; 2OGK A; 4IOC D; 1YIT D; 3CCR D; 4U67 D; 1W2B D; 1VQO D; 3CPW D; 3CCS D; 1VQ7 D; 5DM7 D; 3CCV D; 1VQK D; 3CC7 D; 1YJW D; 1YIJ D; 1YHQ D; 1Q86 F; 5MLC G; 4WFA D; 5GAE F; 1N8R F; 3CCL D; 3OW2 D; 3G71 D; 1KQS D; 2NWU A; 1VQ6 D; 1K9M F; 3C9G A; 3CXC D; 5GAG F; 3CMA D; 5H1S H; 1QVG D; 4IO9 D; 5GAH F; 3G6E D; 1YJ9 D; 3CME D; 1VQP D; 2OTJ D; 2NRQ A; 1JJ2 D; 3CCJ D; 3CF5 D; 1YJN D; 2OTL D; 1M90 F; 2PZZ A; 2ZJQ D; 3CCM D; 1S72 D; 1VQ5 D; 2QA4 D; 3PIO D; 1Q82 F; 1VQ4 D; 1VQM D; 1K8A F; 3CD6 D; 5GAD F; 2ZJR D; 3CC2 D; 1Q7Y F; 1VQ8 D; 3D7A A; 3PIP D; 3CCQ D; 1YI2 D; 3J7Z F; 5JVG D; 4UY8 F; 1KD1 F; 4WCE D;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
