1NA6 | Genus

Total Genus 101

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	101
sequence length	395
structure length	365
Chain Sequence	SVFHNWLLEIACENYFVYIKRLSANDTGATQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGLSLQQAPVNHKYILPEDWHLRFPSGSEIIQYAASHYDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFGSVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQAPDFLFPSAGAYHPLRMLAVKTTCKDRWRQILNHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 365 atoms

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365 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Escherichia coli
publication title	Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold. pubmed doi rcsb
molecule keywords	Restriction endonuclease EcoRII
total genus	101
structure length	365
sequence length	395
chains with identical sequence	B
ec nomenclature	ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date	2002-11-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09019	EcoRII-C	EcoRII C terminal
A	PF09217	EcoRII-N	Restriction endonuclease EcoRII, N-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.330.10	Mainly Beta	Beta Barrel	At1g16640 B3 domain	DNA-binding pseudobarrel domain	1na6A01

4LDVA 4I1KA 1YELA 4LDWA 3HQFA 1NA6A 4LDUA 4LDYA 1WIDA 4LDXA
chains in the Genus database with same CATH superfamily

4LDVA 3ZI5A 1YELA 4I1KA 4LDYA 1N0EA 2C1LA 4LDWA 3HQFA 1NA6A 1N0GA 1N0FA 4LDUA 1WIDA 4LDXA
chains in the Genus database with same CATH topology

4LDVA 4I1KA 1YELA 4LDWA 3HQFA 1NA6A 4LDUA 4LDYA 1WIDA 4LDXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4LDV A;  4I1K A;  1YEL A;  4LDW A;  3HQF A;  1NA6 A;  4LDU A;  4LDY A;  1WID A;  4LDX A; 
#chains in the Genus database with same CATH topology
 4LDV A;  3ZI5 A;  1YEL A;  4I1K A;  4LDY A;  1N0E A;  2C1L A;  4LDW A;  3HQF A;  1NA6 A;  1N0G A;  1N0F A;  4LDU A;  1WID A;  4LDX A; 
#chains in the Genus database with same CATH homology
 4LDV A;  4I1K A;  1YEL A;  4LDW A;  3HQF A;  1NA6 A;  4LDU A;  4LDY A;  1WID A;  4LDX A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1NA6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations