3ZI5A

Crystal structure of restriction endonuclease bfii c-terminal recognition domain in complex with cognate dna
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
166
structure length
166
Chain Sequence
LDETERVTLIVTLGHADTARIQAAPGTTAGQGTQYFWLSKDSYDFFPPLTIRNRRGTKATYSSLINMNYIDINYTDTQCRVTFEAENNFDFRLGTGKLRYTGVAKSNDIAAITRVGDSDYELRIIKQGTPEHSQLDPYAVSFIGNRGKRFGYISNEEFGRIIGVTF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Insight Into the Specificity of the B3 DNA-Binding Domains Provided by the Co-Crystal Structure of the C-Terminal Fragment of Bfii Restriction Enzyme
pubmed doi rcsb
molecule tags Hydrolase/dna
source organism Bacillus firmus
molecule keywords RESTRICTION ENDONUCLEASE
total genus 41
structure length 166
sequence length 166
chains with identical sequence D
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2013-01-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18243 BfiI_DBD Metal-independent restriction enzyme BfiI DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.330.30 Mainly Beta Beta Barrel At1g16640 B3 domain At1g16640 B3 domain 3zi5A00
2C1LA 3ZI5A
chains in the Genus database with same CATH superfamily
4LDYA 4I1KA 1YELA 4LDUA 1N0GA 4LDVA 4LDXA 1WIDA 4LDWA 1NA6A 3ZI5A 3HQFA 1N0FA 2C1LA 1N0EA
chains in the Genus database with same CATH topology
1N0GA 3ZI5A 1N0FA 2C1LA 1N0EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C1L A;  3ZI5 A; 
#chains in the Genus database with same CATH topology
 4LDY A;  4I1K A;  1YEL A;  4LDU A;  1N0G A;  4LDV A;  4LDX A;  1WID A;  4LDW A;  1NA6 A;  3ZI5 A;  3HQF A;  1N0F A;  2C1L A;  1N0E A; 
#chains in the Genus database with same CATH homology
 1N0G A;  3ZI5 A;  1N0F A;  2C1L A;  1N0E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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