1PVUA

The crystal structure of pvuii endonuclease reveals extensive structural homologies to ecorv
Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
156
structure length
154
Chain Sequence
SHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPGGNDAVDNAGQEYELKSINIDLTKGFSTHHHMNPVIIAKYRQVPWIFAIYRGIAIEAIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-26)AH2 (36-46)TVIII1 (28-31)TI1 (30-33)EMPTYS1 (49-50)S3 (66-73)S4 (79-80)TI3 (73-76)TI4 (74-77)TIV5 (139-142)TIV4 (134-137)TVIII2 (83-86)3H1 (117-119)AH3 (88-95)AH4 (120-134)S5 (99-105)TIV3 (104-107)S6 (108-115)S8 (154-155)AH5 (146-152)S7 (144-145)TIV1 (32-35)TI2 (61-64)Updating...
connected with : NaN
publication title Crystal structure of PvuII endonuclease reveals extensive structural homologies to EcoRV.
pubmed doi rcsb
molecule tags Type ii restriction endonuclease
source organism Proteus vulgaris
molecule keywords Pvu II
total genus 47
structure length 154
sequence length 156
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 1995-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09225 Endonuc-PvuII Restriction endonuclease PvuII
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.210.10 Alpha Beta 3-Layer(aba) Sandwich PvuII Endonuclease; Chain A PVUII Endonuclease, subunit A 1pvuA00
1H56A 2PVIA 1PVUA 1EYUA 1PVIA 3PVIA 1F0OA 1K0ZA 1NI0A
chains in the Genus database with same CATH superfamily
1H56A 2Q10A 2PVIA 1PVUA 1EYUA 1PVIA 3PVIA 2OA9A 2ODIA 4ESJA 1K0ZA 1F0OA 3IMBA 2OAAA 4KYWA 2ODHA 1NI0A
chains in the Genus database with same CATH topology
1H56A 2PVIA 1PVUA 1EYUA 1PVIA 3PVIA 1F0OA 1K0ZA 1NI0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H56 A;  2PVI A;  1PVU A;  1EYU A;  1PVI A;  3PVI A;  1F0O A;  1K0Z A;  1NI0 A; 
#chains in the Genus database with same CATH topology
 1H56 A;  2Q10 A;  2PVI A;  1PVU A;  1EYU A;  1PVI A;  3PVI A;  2OA9 A;  2ODI A;  4ESJ A;  1K0Z A;  1F0O A;  3IMB A;  2OAA A;  4KYW A;  2ODH A;  1NI0 A; 
#chains in the Genus database with same CATH homology
 1H56 A;  2PVI A;  1PVU A;  1EYU A;  1PVI A;  3PVI A;  1F0O A;  1K0Z A;  1NI0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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