1VEXA

F-spondin tsr domain 4
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
56
structure length
56
Chain Sequence
GSIPCLLSPWSEWSDCSVTCGKGMRTRQRMLKSLAELGDCNEDLEQAEKCMLPECP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Solution structures of the first and fourth TSR domains of F-spondin
pubmed doi rcsb
molecule tags Cell adhesion
source organism Rattus norvegicus
molecule keywords F-spondin
total genus 5
structure length 56
sequence length 56
ec nomenclature
pdb deposition date 2004-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00090 TSP_1 Thrombospondin type 1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.100.10 Mainly Beta Single Sheet TSP-1 type 1 repeat Thrombospondin type-1 (TSP1) repeat 1vexA00
3VDKA 4HQLA 3VDJA 3R6BA 4A5WB 3T5OA 1LSLA 4HQOA 1VEXA 3VDLA 4HQNA 1SZLA
chains in the Genus database with same CATH superfamily
3VDKA 4HQLA 3VDJA 3R6BA 4A5WB 3T5OA 1LSLA 4HQOA 1VEXA 3VDLA 4HQNA 1SZLA
chains in the Genus database with same CATH topology
3VDKA 4HQLA 3VDJA 3R6BA 4A5WB 3T5OA 1LSLA 4HQOA 1VEXA 3VDLA 4HQNA 1SZLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VDK A;  4HQL A;  3VDJ A;  3R6B A;  4A5W B;  3T5O A;  1LSL A;  4HQO A;  1VEX A;  3VDL A;  4HQN A;  1SZL A; 
#chains in the Genus database with same CATH topology
 3VDK A;  4HQL A;  3VDJ A;  3R6B A;  4A5W B;  3T5O A;  1LSL A;  4HQO A;  1VEX A;  3VDL A;  4HQN A;  1SZL A; 
#chains in the Genus database with same CATH homology
 3VDK A;  4HQL A;  3VDJ A;  3R6B A;  4A5W B;  3T5O A;  1LSL A;  4HQO A;  1VEX A;  3VDL A;  4HQN A;  1SZL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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