3R6BA

Crystal structure of thrombospondin-1 tsr domains 2 and 3
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
115
structure length
115
Chain Sequence
LQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Expression, purification and structural characterization of functionally replete thrombospondin-1 type 1 repeats in a bacterial expression system.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Homo sapiens
molecule keywords Thrombospondin-1
total genus 15
structure length 115
sequence length 115
ec nomenclature
pdb deposition date 2011-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00090 TSP_1 Thrombospondin type 1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.100.10 Mainly Beta Single Sheet TSP-1 type 1 repeat Thrombospondin type-1 (TSP1) repeat 3r6bA02
2.20.100.10 Mainly Beta Single Sheet TSP-1 type 1 repeat Thrombospondin type-1 (TSP1) repeat 3r6bA01
1SZLA 4HQLA 3R6BA 3T5OA 4HQNA 3VDKA 1LSLA 3VDJA 1VEXA 4A5WB 4HQOA 3VDLA
chains in the Genus database with same CATH superfamily
1SZLA 4HQLA 3R6BA 3T5OA 4HQNA 3VDKA 1LSLA 3VDJA 1VEXA 4A5WB 4HQOA 3VDLA
chains in the Genus database with same CATH topology
1SZLA 4HQLA 3R6BA 3T5OA 4HQNA 3VDKA 1LSLA 3VDJA 1VEXA 4A5WB 4HQOA 3VDLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SZL A;  4HQL A;  3R6B A;  3T5O A;  4HQN A;  3VDK A;  1LSL A;  3VDJ A;  1VEX A;  4A5W B;  4HQO A;  3VDL A; 
#chains in the Genus database with same CATH topology
 1SZL A;  4HQL A;  3R6B A;  3T5O A;  4HQN A;  3VDK A;  1LSL A;  3VDJ A;  1VEX A;  4A5W B;  4HQO A;  3VDL A; 
#chains in the Genus database with same CATH homology
 1SZL A;  4HQL A;  3R6B A;  3T5O A;  4HQN A;  3VDK A;  1LSL A;  3VDJ A;  1VEX A;  4A5W B;  4HQO A;  3VDL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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