1WID | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	117
structure length	117
Chain Sequence	RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 117 atoms

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117 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Dna binding protein
source organism	Arabidopsis thaliana
publication title	Solution Structure of the B3 DNA Binding Domain of the Arabidopsis Cold-Responsive Transcription Factor RAV1 pubmed doi rcsb
molecule keywords	DNA-binding protein RAV1
total genus	14
structure length	117
sequence length	117
ec nomenclature
pdb deposition date	2004-05-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02362	B3	B3 DNA binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.330.10	Mainly Beta	Beta Barrel	At1g16640 B3 domain	DNA-binding pseudobarrel domain	1widA00

1YELA 4LDXA 1NA6A 1WIDA 4I1KA 4LDUA 4LDYA 3HQFA 4LDWA 4LDVA
chains in the Genus database with same CATH superfamily

1YELA 3ZI5A 1N0FA 4LDXA 1N0EA 1NA6A 1WIDA 1N0GA 4I1KA 4LDUA 4LDYA 2C1LA 3HQFA 4LDWA 4LDVA
chains in the Genus database with same CATH topology

1YELA 4LDXA 1NA6A 1WIDA 4I1KA 4LDUA 4LDYA 3HQFA 4LDWA 4LDVA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1YEL A;  4LDX A;  1NA6 A;  1WID A;  4I1K A;  4LDU A;  4LDY A;  3HQF A;  4LDW A;  4LDV A; 
#chains in the Genus database with same CATH topology
 1YEL A;  3ZI5 A;  1N0F A;  4LDX A;  1N0E A;  1NA6 A;  1WID A;  1N0G A;  4I1K A;  4LDU A;  4LDY A;  2C1L A;  3HQF A;  4LDW A;  4LDV A; 
#chains in the Genus database with same CATH homology
 1YEL A;  4LDX A;  1NA6 A;  1WID A;  4I1K A;  4LDU A;  4LDY A;  3HQF A;  4LDW A;  4LDV A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1WIDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations